Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0847 ATGGCTCATAGGTTGCTGAGAGATCACGAAGCCGACGGATGGGAGCGCTCCGATTTCCCCATCATCTGCGAATCATGTCTCGGCGACAGTCCCTATGTTCGAATGACGAGAGCAGAGTATGATAAGGAGTGCAAAATTTGTACAAGGCCTTTTACTGTTTTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAAGTGAGATATGTCAGACATGTAGCAAATTGAAAAATGTTTGTCAGGTCTGCCTTCTTGATCTTGAATATGGATTACCGGTTCAAGTCCGTGATACAGCTCTTAGTATTGATTCTAATGATGCCATTCCCAAGAGTGATGTTAATAGGGAGTATTTCGCGGAAGAGCATGACCGCAAGGCAAGAGCTGGTATGGATTATGAATCCTCCTTTGGTAAAGCACGCCCAAGTGATACTATCCTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAATCGGGCACATGTTTGCAGTTTCTACATAAGGGGTGAGTGTACTAGAGGAGCTGAGTGTCCTTATAGGCACGAGATGCCAGTGACTGGGGAGTTGTCTCAACAAAATATTAAAGATCGTTATTACGGGGTGAATGATCCAGTGGCTTTAAAGCTACTTGGCAAGGCAGGGGAGATGCCCTCTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCCAGAGTCACTGAGCAAGATTTGCGGGATAACTTCTATGCCCATGGTGAAATCGAATCCATCAAATTGGTTCTTCAGCGGGCTTGTGCATTTGTAACCTATACAACCAGAGAAGGTGCCGAAAAGGCAGCAGAAGAACTCTCAAACAAACTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGGAGGCCTCAGTCGGCAAAACCTGAGTCAGATGGCTCTGATCAAGCGAGGCAGCAGGCATCTGTGGCTCATAGTGGGTTATTGCCTCGAGCAGTTATATCACAGCAGCAGAGCCAGGACCAGAACCAAGGAATGGTTTACTATAACAATCCACCTCCTCAACAGGACAGAAGTTATTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTGTTTCATCCCAAGAGGGTCCTCCTGGGGGACCTTCTGGGTCGGGGGAGAACAAACCCAATATGGAGAAGCAGCAAATGCAACATTATCCCCATCCAATGATGCCTCCACCACCAAGCCAATATCATCATCAGTATTATCCTCCATATGGCTATATGCCACCAGTGCCCCCTTATCAACAACAGTACCCACCACCACCATATAATGCTCCAATGCCTCCATCGCAGCCACCAGCTGTAAATCATCCCTATCAGCATTCTATGCAGCCCGGGTCTTCACACGCAGGGTCTGGTCAGGGTGGCTCTGCTCCAACCGATGCTGGAGGGTCGACGTCAGGGTCACAGCAGTAA 1455 0.4742 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRKARAGMDYESSFGKARPSDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLEAPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKLVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQSAKPESDGSDQARQQASVAHSGLLPRAVISQQQSQDQNQGMVYYNNPPPQQDRSYYPSMDPQRMGALVSSQEGPPGGPSGSGENKPNMEKQQMQHYPHPMMPPPPSQYHHQYYPPYGYMPPVPPYQQQYPPPPYNAPMPPSQPPAVNHPYQHSMQPGSSHAGSGQGGSAPTDAGGSTSGSQQ 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0847 484 MobiDBLite consensus disorder prediction 419 448 - -
Lal24g0847 484 MobiDBLite consensus disorder prediction 306 320 - -
Lal24g0847 484 MobiDBLite consensus disorder prediction 333 391 - -
Lal24g0847 484 MobiDBLite consensus disorder prediction 333 359 - -
Lal24g0847 484 MobiDBLite consensus disorder prediction 449 484 - -
Lal24g0847 484 Gene3D - 213 310 IPR012677 -
Lal24g0847 484 MobiDBLite consensus disorder prediction 301 321 - -
Lal24g0847 484 Gene3D - 149 209 - -
Lal24g0847 484 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 463 IPR039171 GO:0003723
Lal24g0847 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Lal24g0847 484 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Lal24g0847 484 SMART rrm1_1 229 297 IPR000504 GO:0003723
Lal24g0847 484 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Lal24g0847 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Lal24g0847 484 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Lal24g0847 484 SUPERFAMILY RNA-binding domain, RBD 221 309 IPR035979 GO:0003676
Lal24g0847 484 Pfam Torus domain 136 194 IPR032297 -
Lal24g0847 484 CDD RRM_RBM22 227 300 - -
Lal24g0847 484 MobiDBLite consensus disorder prediction 419 484 - -
Lal24g0847 484 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0847 Lal-Chr24 6857794 6861561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0847 220 289 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 6.26e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0847 K12872 - gmx:100778975 780.785