Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0840 ATGGGTAACACACATGGCCATCGTCACCAACACCGTAACTCCCTTCAACCTCCTCCGACATATAAATATGATTCTCAACCTCAACAGTTACCATTACCGAATCCAATTCACCAAGGAACCTCCAATTCCAACAACAACAACATGCACTCTTTGCCTTACACTCAACTCGACTCCACCACTCTCAGAGCCCTCGCCGGAAACGCTGAGGGCTTTGGTCGCTTCGCTATCGGTGGTTTTCACGGTCCCCTTTATCATGTCACTTCTTTATCAGATGATGGACCAGGATCACTACGTGATGCTTGTCGCAAAAAAGAACCTTTTTGGATTGTGTTTGAGGTATCAGGCACTATTCATCTTTCGTCATACTTGAATGTATCATCATACAAGACGATTGATGGTCGGGGCCAAAGGATTAAGCTCACGGGAAAAGGATTGCGGCTAAAGGAATGTGAACATGTGATAATTTGCAATTTAGAGTTTGAAGGAGGTAGAGGTCCTGATGTTGATGGCATTCAGATCAAGCCTAATTCAAAGCACATATGGATAGATCGTTGCAGTCTCCGGGATTTTGATGATGGGCTGATAGATATCACACGAGAAAGCACGGATATTACTATTTCAAGGTGTCATTTTTCTCAACATGACAAAACAATGCTTATTGGGGCAGATCCCTCACACGTTGGTGATAGATGCATGAGAGTCACTATCCATCACTGTTTTTTTAACGAGACTCGACAGAGGCATCCTCGAGTTAGATATGCAAAAGTACATCTGTACAATAATTACACCAGAGGCTGGGGCATATATGCTGTCTGTGCAAGTGTTGAATCCCAGATATTCTCGCAACATAATATCTATGAAGCAGGACATAAGAAGGTGGCATTTAAGTATCTTACAGAGAAGGCAGCGGACAAGGAATCGGGAGCAACTGGGCAGATAAGGTCAGAAGGAGACTTATTTTTAAATGGAGCTCAACCAGGGCTAATGAATGAGGATGTTGGATATAACATGTTTCATCCCAGTGAATACTATCCCACATGGACAGTAGGACCTCCTACAGATGATCTGAAACAGCTTCTACATCACTGCACCGGATGGCAATCGGTTGCGAGGCCACCGGATCAAACAGCTTTTGCCGAATAG 1143 0.4401 MGNTHGHRHQHRNSLQPPPTYKYDSQPQQLPLPNPIHQGTSNSNNNNMHSLPYTQLDSTTLRALAGNAEGFGRFAIGGFHGPLYHVTSLSDDGPGSLRDACRKKEPFWIVFEVSGTIHLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPNSKHIWIDRCSLRDFDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHVGDRCMRVTIHHCFFNETRQRHPRVRYAKVHLYNNYTRGWGIYAVCASVESQIFSQHNIYEAGHKKVAFKYLTEKAADKESGATGQIRSEGDLFLNGAQPGLMNEDVGYNMFHPSEYYPTWTVGPPTDDLKQLLHHCTGWQSVARPPDQTAFAE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0840 380 MobiDBLite consensus disorder prediction 13 52 - -
Lal24g0840 380 Pfam Pectate lyase 122 285 IPR002022 -
Lal24g0840 380 SUPERFAMILY Pectin lyase-like 65 369 IPR011050 -
Lal24g0840 380 PRINTS Pollen allergen Amb family signature 67 84 IPR018082 -
Lal24g0840 380 PRINTS Pollen allergen Amb family signature 122 138 IPR018082 -
Lal24g0840 380 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Lal24g0840 380 Gene3D - 53 348 IPR012334 -
Lal24g0840 380 MobiDBLite consensus disorder prediction 1 52 - -
Lal24g0840 380 PANTHER PECTATE LYASE 18-RELATED 45 372 IPR045032 GO:0030570
Lal24g0840 380 SMART amb_all 94 292 IPR002022 -
Lal24g0840 380 PANTHER PECTATE LYASE 45 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0840 Lal-Chr24 6702318 6708903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0840 89 374 Polysaccharide Lyase AT3G55140 76.573 6.11e-170 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0840 K01728 - gmx:100814368 628.246