Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0829 ATGATGAAGAGAATGAGAGAAAACGAAGAAAAAGAGAGCATAGCTTTGGCAAATAATCTAATGCTATTATCTAAGTCCTTAAATAAGAGTTATCCTTCATTGGAGTTTAAATGCAAGACATGCAACCGCAAGTTCTCATCATTTCAAGCATTGGGTGGCCACAGTGCTAGCCACAAGAAACAAAAACTCATCAATGTAGATCAAGAATTGATGAGACAAGAGGCCATGAAACCCAAAATGCATGAGTGTTCCATTTGTGGTCAAGAATTCACTATGGGGCAAGCATTGGGAGGACACATGAGAAGACACAGAGTTTCTGCTGCCACTAATGAAAAGGGTTTTAGTTCTATTAAGCATGATATTGCAAAGGTTCCAGTTCTGAAAAGATTGAATAGTAAAAGGGTTATGTGCTTGGACTTGAACTTGACACCATTGGAAAATGACTTGAAGTTGTTGTTTGGAAACAAGGCTCCTCAAGTTGATCTTTCTTTGTTCTGA 498 0.3815 MMKRMRENEEKESIALANNLMLLSKSLNKSYPSLEFKCKTCNRKFSSFQALGGHSASHKKQKLINVDQELMRQEAMKPKMHECSICGQEFTMGQALGGHMRRHRVSAATNEKGFSSIKHDIAKVPVLKRLNSKRVMCLDLNLTPLENDLKLLFGNKAPQVDLSLF 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0829 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 103 IPR013087 -
Lal24g0829 165 SMART c2h2final6 81 103 IPR013087 -
Lal24g0829 165 SMART c2h2final6 36 58 IPR013087 -
Lal24g0829 165 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 2 159 - -
Lal24g0829 165 SUPERFAMILY beta-beta-alpha zinc fingers 36 103 IPR036236 -
Lal24g0829 165 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Lal24g0829 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Lal24g0829 165 Pfam C2H2-type zinc finger 81 104 - -
Lal24g0829 165 Pfam C2H2-type zinc finger 36 61 - -
Lal24g0829 165 PANTHER ZINC FINGER PROTEIN ZAT5 2 159 - -
Lal24g0829 165 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Lal24g0829 165 Gene3D Classic Zinc Finger 34 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0829 Lal-Chr24 6591492 6591989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0829 2 164 C2H2 Transcription Factor Family AT3G53600 48.315 4.47e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal24g0829 zf-C2H2_6 1.1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0829 - - lang:109338093 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0829 24 6591492 6591989 Lal24g0829 24 6591492 6591989 ECH