Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0816 ATGGCGGCGGAACGGCGGCTCCGTGACCTCCAATCCCAACCCAGCAACAAAATCTGCGTCGACTGCTCCCAGAAAAACCCGCAATGGGCCTCCGTCTCCTACGGCGTCTTCATGTGCCTCGAGTGCTCCGGCAAGCACCGCGGTCTCGGCGTCCACATCTCCTTCGTACGCTCCGTCACCATGGACTCCTGGTCCGAAATCCAGATCAAGAAAATGGAAGCTGGTGGCAACGACAAACTCAACGCTTTTTTCTCTCGTTACGAAATCCCTAAGGAAATAGATATTGTTACTAAGTATAATACCAATGCTTCTTCTGTATATAGGGATCGAATCCAAGCTATAGCTGAAGGCCGCGCTTGGCGTGATCCACCTGTGGTTAAGGAGAGTCTCAAGGGAAACCAGTGCGGTGGCAGTGGTGGTGGTGGTGGTGGTGGCGGTGGAGGAAGTCGTAGGAATGACGGAGGGCGTAACCACTCGACTGGAGATTTCAGAAGCGGTGGAGGTGGTGGTGGTGGTGCGGCTCCGATGAGGTCGAGGTCTACGACGGACTTCAGGGGATCGGAATTGCAGGCTTCGGCGGCGAATAAGGAGAGCTTTTTCGCGAGGAAGATTGCGGAGAATGAATCAAGACCGGAGGGGCTTCCACCATCGAAGGGTGGAAAGTATGTTGGGTTTGGATCAAGTCCTGCACCTTCTTCCCAGAGGAGCAATCAGCAAAATGATTATTTTTCTGTCGTTTCTCAGGGGATTGGTAAATTGTCGTTGGTTGCTGCATTTGCAGCTCAAGAGATCACTTCTAAGAAACAGTGGACGAGCTTGGACAAAATATTTCGGGAGCTAACTTATAATTATGATGCTGCTGGCTTGATGGTTGCTTACACCTTCGATTGTCCTAAGAGCCCAAGTTCAATTCCCCATTATTACAACTATATTAAAAAGGTCAAGGAAGGTGGTTATGATGACAAGGTCAATGAAACTGTCAGTGTTGTCTCTCAGAAGACGTCAGAGATTGGACAAAGGACATGGGGCATAATGAAAGGGGTCTTGGCTATGGCTTCACAGAAGGTTGAGGAATTGGCTGGAGATGGTCCAAATTCGAAGACTGATAACTGGCAGCGAAATGAGAATAATAGAAATGGTTACTATCTGGATTTCAATCAAGAGAATAAAGGCTGGAACTCTTCTATGGAAAGAAAACAATCTTCATCATGGCAATCTAAAACTCATAGTGCAAGCTCTTTGGATGAGTGGGGCAACAAAGATAGTAGGAAGGAGGAACCAGCTAAAGGATCGACTCATTCGTCAAGTGGGCAGTTCAATACTTCCAACTCAAGCTCTTGGGATGATTGGGACCACAAAGATTCTAAGAAGGAAGAATCAACTAAAGGATCGGCTGTAAATAGCAGTGATGGTTGGGCTGGCTGGGGCGATGCCAAAGATGATGGATTTGATAATTTTGATGATGTTTCCTCTAATAAGAAAGGTGCTGATCATAACGGAAAATCAGAATCAAACTGGACAGGGGGTGGCTTTCTCTAA 1539 0.4756 MAAERRLRDLQSQPSNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNAFFSRYEIPKEIDIVTKYNTNASSVYRDRIQAIAEGRAWRDPPVVKESLKGNQCGGSGGGGGGGGGGSRRNDGGRNHSTGDFRSGGGGGGGAAPMRSRSTTDFRGSELQASAANKESFFARKIAENESRPEGLPPSKGGKYVGFGSSPAPSSQRSNQQNDYFSVVSQGIGKLSLVAAFAAQEITSKKQWTSLDKIFRELTYNYDAAGLMVAYTFDCPKSPSSIPHYYNYIKKVKEGGYDDKVNETVSVVSQKTSEIGQRTWGIMKGVLAMASQKVEELAGDGPNSKTDNWQRNENNRNGYYLDFNQENKGWNSSMERKQSSSWQSKTHSASSLDEWGNKDSRKEEPAKGSTHSSSGQFNTSNSSSWDDWDHKDSKKEESTKGSAVNSSDGWAGWGDAKDDGFDNFDDVSSNKKGADHNGKSESNWTGGGFL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0816 512 MobiDBLite consensus disorder prediction 414 430 - -
Lal24g0816 512 SUPERFAMILY ArfGap/RecO-like zinc finger 4 111 IPR037278 -
Lal24g0816 512 CDD ArfGap_ArfGap1 3 117 - -
Lal24g0816 512 MobiDBLite consensus disorder prediction 480 500 - -
Lal24g0816 512 MobiDBLite consensus disorder prediction 431 446 - -
Lal24g0816 512 MobiDBLite consensus disorder prediction 180 194 - -
Lal24g0816 512 MobiDBLite consensus disorder prediction 365 413 - -
Lal24g0816 512 MobiDBLite consensus disorder prediction 125 238 - -
Lal24g0816 512 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 431 512 IPR044519 GO:0005096|GO:0016192
Lal24g0816 512 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 312 435 IPR044519 GO:0005096|GO:0016192
Lal24g0816 512 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 269 IPR044519 GO:0005096|GO:0016192
Lal24g0816 512 Pfam Putative GTPase activating protein for Arf 5 108 IPR001164 GO:0005096
Lal24g0816 512 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Lal24g0816 512 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Lal24g0816 512 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Lal24g0816 512 SMART arf_gap_3 4 129 IPR001164 GO:0005096
Lal24g0816 512 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 269 - -
Lal24g0816 512 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 431 512 - -
Lal24g0816 512 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 312 435 - -
Lal24g0816 512 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 84 IPR001164 GO:0005096
Lal24g0816 512 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Lal24g0816 512 MobiDBLite consensus disorder prediction 447 463 - -
Lal24g0816 512 MobiDBLite consensus disorder prediction 359 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0816 Lal-Chr24 6456968 6462609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0816 4 87 C2H2 Transcription Factor Family AT4G05330 49.412 1.20e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0816 K12492 - gmx:100806519 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0886 12 7301378 7308792 Lal24g0816 24 6456968 6462609 LSH
Lal13g1083 13 8154782 8160179 Lal24g0816 24 6456968 6462609 LSH
Lal11g1113 11 14859034 14863235 Lal24g0816 24 6456968 6462609 PCT
Lal24g0816 24 6456968 6462609 Lal11g1113 11 14859034 14863235 PCT