Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0812 ATGGCTGGTAAAGGTGAAGGTCCTGCTATTGGAATCGATCTTGGAACAACATATTCATGTGTTGGTGTGTGGCAACATGATCGTGTTGAAATCATTGCTAATGATCAAGGAAACAGAACGACACCGTCTTATGTTGGATTTACGGATACAGAACGTCTTATTGGTGATGCTGCTAAGAATCAAGTTGCCATGAACCCTATTAACACTGTTTTTGATGCAAAGAGGTTGATTGGCCGTAGACTGAATGATGCTTCTGTTCAGAGCGACATAAAGTTGTGGCCTTTTAAGGTTGTAGCTGGACCAAGTGACAAGCCACTGATCCAAGTTAACTACAAGGGTGAAGATAAACAGTTTGCTGCTGAAGAAATCTCTTCTATGGTTCTCATTAAGATGCGTGAGATCGCAGAAGCTTATCTCGGATCTACAATCAAGAATGCTGTTGTCACAGTCCCAGCTTATTTCAATGATTCGCAGCGTCAAGCTACTAAGGATGCTGGTGTTATTGCTGGTCTTAATGTGATGCGTATTATCAACGAGCCTACTGCAGCAGCCATTGCTTATGGTCTCGACAAGAAGGCTACTAGTGTTGGTGAGAAGAATGTGTTGATTTTTGATCTTGGAGGTGGTACTTTTGATGTCTCCTTGCTTACCATTGAAGAGGGTATCTTTGAGGTGAAGGCCACGGCCGGGGACACCCATCTCGGAGGCGAGGATTTTGATAACCGGATGGTGAACCACTTTGTTCAGGAGTTTAAGAGAAAGAACAAGAAGGATATTAGTGGCAACCCCAGAGCACTTAGGAGGTTGAGGACTGCTTGTGAGAGGGCAAAGAGAACTCTATCATCAACTGCCCAGACCACGATTGAAATCGATTCTCTTTTCGAGGGAATTGATTTCTACTCTCCCATTACACGTGCAAGATTTGAGGAGCTCAATATGGATCTATTCAGGAAATGTATGGAACCAGTTGAGAAGTGTTTAAGAGATGCTAAAATGGACAAGAGGAGTGTTCATGATGTTGTACTTGTTGGTGGTTCTACTAGAATCCCGAAGGTTCAACAACTTCTACAGGATTTCTTCAATGGGAAGGAGCTCTGCAAGAGCATCAACCCGGACGAGGCTGTTGCATATGGTGCTGCTGTTCAAGCTGCTATCTTGACTGGTGAGGGTAACGAGAAGGTTCAGGATCTTCTCCTCCTCGATGTCACCCCACTCTCGCTTGGTTTGGAGACGGCTGGTGGCGTCATGACTGTACTCATCCCCAGGAACACTACAATTCCAACAAAGAAAGAACAAGTTTTCTCAACCTATTCCGACAACCAGCCCGGTGTGTTGATCCAGGTTTTCGAAGGTGAGCGAACAAGGACCAGGGACAACAATTTGCTTGGAAAATTTGAACTCTCAGGCATTCCTCCTGCACCAAGGGGTGTTCCACAGATCACAGTGTGCTTTGACATCGATGCCAATGGTATCTTAAATGTCTCAGCTGAAGACAAAACTACAGGCCAAAAGAACAAGATCACAATCACCAACGACAAGGGTAGGTTGTCAAAGGATGATATTGAGAAGATGGTTCAAGAGGCTGAAAAGTATAAATCTGAAGATGAAGAGCACAAGAAGAAGGTGGAGGCAAAGAATGCATTGGAGAACTATGCATATAACATGAGGAACACTGTGAAGGATGAGAAGATTGCAGGAAAGCTTGATCCTGCTGATAAGAAGAAGATTGAGGATGCAGTTGATGGAGCCATCCAGTGGCTAGACACCAACCAGCTCGGAGAGGTCGACGAGTTCGAGGACAAAATGAAGGAGTTGGAGGGCATTTGCAACCCAATCATTGCCAAGATGTATCAGGGTGGTGCTGGTCCTGATCTTGGTGGTGGAATACATGAAGATGGACCTGCTGGTGGAAGTGGTGCTGGCCCCAAGATTGAAGAAGTCGACTAA 1947 0.451 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRLNDASVQSDIKLWPFKVVAGPSDKPLIQVNYKGEDKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFYSPITRARFEELNMDLFRKCMEPVEKCLRDAKMDKRSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILTGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDDIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKIAGKLDPADKKKIEDAVDGAIQWLDTNQLGEVDEFEDKMKELEGICNPIIAKMYQGGAGPDLGGGIHEDGPAGGSGAGPKIEEVD 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0812 648 Gene3D - 192 366 - -
Lal24g0812 648 Gene3D Actin; Chain A, domain 4 235 318 - -
Lal24g0812 648 PRINTS 70kDa heat shock protein signature 8 21 - -
Lal24g0812 648 PRINTS 70kDa heat shock protein signature 36 48 - -
Lal24g0812 648 PRINTS 70kDa heat shock protein signature 58 66 - -
Lal24g0812 648 PRINTS 70kDa heat shock protein signature 146 166 - -
Lal24g0812 648 PRINTS 70kDa heat shock protein signature 209 219 - -
Lal24g0812 648 PRINTS 70kDa heat shock protein signature 337 353 - -
Lal24g0812 648 PRINTS 70kDa heat shock protein signature 369 389 - -
Lal24g0812 648 PRINTS 70kDa heat shock protein signature 396 415 - -
Lal24g0812 648 PRINTS 70kDa heat shock protein signature 477 493 - -
Lal24g0812 648 Coils Coil 521 541 - -
Lal24g0812 648 MobiDBLite consensus disorder prediction 620 648 - -
Lal24g0812 648 Gene3D - 71 126 - -
Lal24g0812 648 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Lal24g0812 648 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 624 IPR029048 -
Lal24g0812 648 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lal24g0812 648 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Lal24g0812 648 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 1 628 - -
Lal24g0812 648 Gene3D - 546 619 IPR029048 -
Lal24g0812 648 Gene3D - 10 384 - -
Lal24g0812 648 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Lal24g0812 648 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Lal24g0812 648 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Lal24g0812 648 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Lal24g0812 648 PANTHER HEAT SHOCK PROTEIN 70KDA 1 628 IPR013126 GO:0005524|GO:0140662
Lal24g0812 648 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 545 IPR029047 -
Lal24g0812 648 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0812 Lal-Chr24 6442515 6445585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0812 1 648 Calmodulin-binding Proteins AT3G12580 90.630 0.0 1199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0812 K03283 - gmx:100804917 1219.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0812 24 6442515 6445585 Lal24g0812 24 6442515 6445585 ECH
Lal11g1110 11 14840362 14843837 Lal24g0812 24 6442515 6445585 PCT
Lal1g1857 1 20842611 20845948 Lal24g0812 24 6442515 6445585 PCT
Lal20g0056 20 380790 383941 Lal24g0812 24 6442515 6445585 PCT
Lal24g0812 24 6442515 6445585 Lal11g1110 11 14840362 14843837 PCT
Lal24g0812 24 6442515 6445585 Lal1g1857 1 20842611 20845948 PCT
Lal24g0812 24 6442515 6445585 Lal20g0056 20 380790 383941 PCT