Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0809 ATGAATCACTGTGTTCCAGATTTCGATATTCAAATGGATGATGATGAAGATTACCAAATATCTCACCCAAAGAAACCTTCCATGCAAAACGACGAGATCGTGGAACTGTTATGGCAAAACGGCCAGGTCGTGATGCAAAGACAAAACCAACGACAGATCAGAAAACTTACACCGGCGTCGACGGCGACAAGCACCGGTGACGTGATGGCGGAGGGTTCTTCATCGGCGAGGGAGATTCGATCTTCAGAAGGTGAAGAGAATTTCCACAGCCAAAACTTGTTCATGCAAGAAGATGAAATGGCTTCGTGGCTTCACTATTCGATCCACGATGAAGATCCTGCTCCGTTGGATCATCACAATTTCTGCATGGGCGGCATACTCTACCCTCCGCCGAATCAGAACGGCGCAGCGGATACCGTTGTGAATACGACGGAGATCCAACAATTGCCTGTAACGGCAGCTTCACGGCCTCCGATCCCGCCGCCGAGGATACAGAACTTTGCGCACTTTTCTAAGCACAACATCACGAGAGTGGAGCCGGCGCCGGCGTTGATTCCAAAGGCCACGGCGGAAAGGGAATCGACGATTGTAGATTCGTGTGATACGGTGGCAGCGGGTTCTAGGGTGACGGAGAATGTGAGGAGCTCAGCGGAACAAGTGGAATCTGGCAGCGAGAGGATCATCGCCGCCGGGAAAGCGCCCGCATCGTCAGGCGGAGGGGAGACGGGGACGTGCGATATGACAGTGACGTCATCTCAGGGCGGTTCGAGCGGAAGTGCTGAACCGGGGCAGAGGGAACCGGCGTTGGACCGGAAGCGGAAGGGCCGGGATTTAGAGGAATCGGACTTTCAGAGCGAGGATGTTGATTTTGAATCTCCAGAAGCAAAAAAACAAGTCCGTAGTTCTACATCTACAAAGAAATCTCGTGCAGCAGAGGTCCATAATCTTTCAGAGAGGAGGCGTCGAGATAGAATCAATGAAAAGATGAGAGCTTTGCAAGAACTTATACCTCGGTGCAACAAGTCTGATAAAGCTTCAATGCTGGACGAAGCAATCGAATATTTGAAGTCACTGCAGCTTCAAGTACAGATGATGTCCATGGGATGTGGTATGGTGCCTATGATGTTTCCGGGAATCCAACAGTATATGCCCCCAATGGGAATGGGAATTGGAATGGGTATGTCGGGCATGGAAATAGGAATGAACAGACCAGTAATGCCATTTCCTAACATGTTAGTTAATTCTGCTTTGCCAGCAGCAAATGCAGCTGCACATTTGGGACCAAGGTTCCCTATGCCTCCTTTCCATATGCCCCATGTTCCTGCGCCTGACTCATCCAGAATGCAAGCACCAAATCAGTCAGATAATATGCTTCCCTCAGTTGGTAGCACACAAGACCCAGATCGATCACGTATCCCGAACTTCGGTGATCCTTATCAGCAATATCTGCAGTTACAATTAATGCAGAATCAGGCAATGAACCAACAAAATGTGAGCAAGCCAAGTACCAGTAGGGGCCAAGAGAATCCAGAAAAGCATCACTCAGTAACTCTCATTAGTGCATTTCAAGTCTTTGAAGTGATACTGAACAAAACAAGGATGATTATCCTTAACAGTGGACTTGTGTGCATTGCAGACATTGCAGCAGCCAAGAATGTAATGGTGATTATTTATATAGAGAAATTGAAGCAGTTCATATAA 1701 0.4827 MNHCVPDFDIQMDDDEDYQISHPKKPSMQNDEIVELLWQNGQVVMQRQNQRQIRKLTPASTATSTGDVMAEGSSSAREIRSSEGEENFHSQNLFMQEDEMASWLHYSIHDEDPAPLDHHNFCMGGILYPPPNQNGAADTVVNTTEIQQLPVTAASRPPIPPPRIQNFAHFSKHNITRVEPAPALIPKATAERESTIVDSCDTVAAGSRVTENVRSSAEQVESGSERIIAAGKAPASSGGGETGTCDMTVTSSQGGSSGSAEPGQREPALDRKRKGRDLEESDFQSEDVDFESPEAKKQVRSSTSTKKSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPMGMGIGMGMSGMEIGMNRPVMPFPNMLVNSALPAANAAAHLGPRFPMPPFHMPHVPAPDSSRMQAPNQSDNMLPSVGSTQDPDRSRIPNFGDPYQQYLQLQLMQNQAMNQQNVSKPSTSRGQENPEKHHSVTLISAFQVFEVILNKTRMIILNSGLVCIADIAAAKNVMVIIYIEKLKQFI 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0809 566 MobiDBLite consensus disorder prediction 265 281 - -
Lal24g0809 566 MobiDBLite consensus disorder prediction 214 319 - -
Lal24g0809 566 MobiDBLite consensus disorder prediction 446 470 - -
Lal24g0809 566 Pfam Helix-loop-helix DNA-binding domain 313 359 IPR011598 GO:0046983
Lal24g0809 566 MobiDBLite consensus disorder prediction 55 86 - -
Lal24g0809 566 CDD bHLH_AtPIF_like 309 372 - -
Lal24g0809 566 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 515 - -
Lal24g0809 566 MobiDBLite consensus disorder prediction 436 471 - -
Lal24g0809 566 MobiDBLite consensus disorder prediction 493 512 - -
Lal24g0809 566 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 309 358 IPR011598 GO:0046983
Lal24g0809 566 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 515 IPR031066 -
Lal24g0809 566 SMART finulus 315 364 IPR011598 GO:0046983
Lal24g0809 566 Gene3D - 304 367 IPR036638 GO:0046983
Lal24g0809 566 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 307 375 IPR036638 GO:0046983
Lal24g0809 566 MobiDBLite consensus disorder prediction 241 260 - -
Lal24g0809 566 MobiDBLite consensus disorder prediction 55 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0809 Lal-Chr24 6418444 6429853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0809 1 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 40.506 1.95e-59 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal24g0809 HLH 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0809 - - gmx:100788491 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0809 24 6418444 6429853 Lal24g0809 24 6418444 6429853 ECH
Lal1g1859 1 20854616 20862725 Lal24g0809 24 6418444 6429853 PCT
Lal20g0049 20 358513 359568 Lal24g0809 24 6418444 6429853 PCT
Lal24g0809 24 6418444 6429853 Lal1g1859 1 20854616 20862725 PCT
Lal24g0809 24 6418444 6429853 Lal20g0049 20 358513 359568 PCT