Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal24g0800 | ATGTCGAAGAGAGGAAGGGGAGGCTCCGCCGGCAACAAGTTCCGCATGTCACTGGGTCTGCCAGTGGCTGCGACGGTCAACTGCGCCGACAACACCGGCGCCAAGAATCTATACATCATTTCAGTGAAGGGAATCAAGGGTAGGTTAAACCGTTTGCCTTCAGCTTGTGTCGGTGACATGGTGATGGCCACCGTCAAGAAAGGGAAACCCGATCTCAGGAAGAAGGTGCTTCCAGCTGTTATCGTTCGTCAGCGCAAGCCATGGCGCCGAAAGGACGGTGTTTTCATGTACTTTGAAGTTTATGATATACATTTGGTTTTTGCAGATAATGCTGGTGTCATTGTGAATCCCAAGGGTGAAATGAAAGGTTCTGCTATCACTGGTCCTATTGGCAAGGAATGCGCTGATTTGTGGCCTAGAATTGCGAGTGCAGCCAATGCCATTGTTTGA | 450 | 0.5 | MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEVYDIHLVFADNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV | 149 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal24g0800 | 149 | Hamap | 50S ribosomal protein L14 [rplN]. | 19 | 149 | IPR000218 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal24g0800 | 149 | PANTHER | 60S RIBOSOMAL PROTEIN L23 | 1 | 149 | - | - | |
| Lal24g0800 | 149 | PANTHER | 50S/60S RIBOSOMAL PROTEIN L14/L23 | 1 | 149 | IPR000218 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal24g0800 | 149 | Gene3D | Ribosomal protein L14 | 1 | 149 | IPR036853 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal24g0800 | 149 | SUPERFAMILY | Ribosomal protein L14 | 11 | 149 | IPR036853 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal24g0800 | 149 | Pfam | Ribosomal protein L14p/L23e | 22 | 149 | IPR000218 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal24g0800 | 149 | SMART | Ribosomal_L14_2 | 19 | 149 | IPR000218 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal24g0800 | Lal-Chr24 | 6303255 | 6305260 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal24g0800 | 1 | 149 | Cytoplasmic Ribosomal Protein Gene Family | AT1G04480 | 92.617 | 2.70e-96 | 272 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal24g0800 | 24 | 6303255 | 6305260 | Lal24g0800 | 24 | 6303255 | 6305260 | ECH | |
| Lal12g0858 | 12 | 7022448 | 7024295 | Lal24g0800 | 24 | 6303255 | 6305260 | LSH | |
| Lal13g1052 | 13 | 7789480 | 7791532 | Lal24g0800 | 24 | 6303255 | 6305260 | LSH | |
| Lal11g1081 | 11 | 14493206 | 14501837 | Lal24g0800 | 24 | 6303255 | 6305260 | PCT | |
| Lal1g1875 | 1 | 21052779 | 21054571 | Lal24g0800 | 24 | 6303255 | 6305260 | PCT | |
| Lal24g0800 | 24 | 6303255 | 6305260 | Lal11g1081 | 11 | 14493206 | 14501837 | PCT | |
| Lal24g0800 | 24 | 6303255 | 6305260 | Lal1g1875 | 1 | 21052779 | 21054571 | PCT |