Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0787 ATGGGTCTTAGAGACATTGGTGCTTCACTGCCTCCTGGGTTTCGGTTTTATCCAAGTGATGAGGAATTGGTCCTTCATTACCTTCACAAAAAGATCACAAATGAGGAAGTTCTGAAGGGTACCTTGATGGAAATTGATTTGCACTCATGTGAGCCATGGCAACTTCCTGAAGTGGCTAAGCTAAATGCAACAGAATGGTATTTCTTCAGTTTCCGTGACCGCAAATATGCAACTGGCTTTAGGACCAATCGCGCAACGACATCTGGATATTGGAAAGCAACTGGGAAAGATCGAACGGTGTTGGACTCAACCACGTGTGAGGTTGTAGGGATGAGAAAAACATTGGTGTTCTATAGGAATAGAGCTCCAAATGGCATCAAATCTGGTTGGATCATGCATGAGTTTCGGTTGGAGACTCCACATATGCCCCCTAAGGAAGATTGGGTTTTGTGTAGAGTGTTTCACAAAGGAAAAGAAGACAACAATGCCAAACTTAGCCCACAACTCATGTTTGATTCCAAAGCTCCATCCCTAACTTTGGATTCATCATCTCCAACAAATCAAACCATCCCTGTTGGGTATAACCAACTTACCCATTTCCCTTCCTCAACGCCAAATAATCTTAATCATCATCATCATCATCTAAACCTTAACCAAAACAATTCTTTCACGAACATTCTTAATTATTCTCGGGACACAAACACCAATTGTAGTACCGTTACTCAAATTAGTCCTAAAGGTGATGATGGGTATGAGTTTTTATGGGACATCGATCTTGAAGAAAATAGCTTTCATGATGGTGTGGTATCAAACTTGGATGGAATGAGATTCGAGGTTGATAATAATAGTATGGTTTTGCTATGA 864 0.4086 MGLRDIGASLPPGFRFYPSDEELVLHYLHKKITNEEVLKGTLMEIDLHSCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDSTTCEVVGMRKTLVFYRNRAPNGIKSGWIMHEFRLETPHMPPKEDWVLCRVFHKGKEDNNAKLSPQLMFDSKAPSLTLDSSSPTNQTIPVGYNQLTHFPSSTPNNLNHHHHHLNLNQNNSFTNILNYSRDTNTNCSTVTQISPKGDDGYEFLWDIDLEENSFHDGVVSNLDGMRFEVDNNSMVLL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0787 287 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Lal24g0787 287 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Lal24g0787 287 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 282 - -
Lal24g0787 287 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Lal24g0787 287 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Lal24g0787 287 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0787 Lal-Chr24 6149528 6155735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0787 6 237 NAC Transcription Factor Family AT1G56010 43.200 1.36e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal24g0787 NAM 2.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0787 - - ccaj:109788642 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0787 24 6149528 6155735 Lal24g0787 24 6149528 6155735 ECH
Lal13g1034 13 7597389 7602553 Lal24g0787 24 6149528 6155735 LSH