Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0777 ATGAGTTCCTCTAATGATCTTTCTTCCACTCCATTGTTGAGATCCAAGAAGAACAATAATCATAATCTCCTAAGCTCAAAACCTCAATCCTCTGCTGATTCCATTTCCCTGACCTCCAAAACGCCAGAGAAGACCGCGCCCCGGTTGCGAAACCGAGGCGTGGCGCTCTCTGTCGTGGAGATCAGGAATGTTGCCAAAGGGCTTCAGGATCAAAGTCACACACAGAAACACAGTGATTTGGATTTGGTGAAGGGCAAATCCGTCAAAAGGAGGATTTCAATGCCTTCACCCCTTAAATCCAAGACCACTGCTGATGGACCCTTTACCATTCCGGAAAAGTATGAAATTTTGTGTGAGTTCTTCCACAGCTTGGATTCATCGATTCGTCTGGCACAAATGAAAGGCAGAATGCCGAGTTTCGCGAATATTGCCCCGAAGATTGAATCTTTAACTGATAGGAGGTTTACACATAGCCATTTGGCCCAGTTGAAATTTATCTTACCTGAAGGAATTCTGATTAAGAAGGTACTCATGTTCGACGAAAGGACGAGTAGTATGAAGCCGGACCTACATGTTACTATAGATCGCGATTTCATATTGTCTGCTGCCAAGTTTCTTCCTAAATGTGAGAGTTTGTGTGAGAGTATGCAATTGAGGCTGTTCTTTCGCATACATCTAGCAGAATTTTGTAAATCTCATCCTGAGGGTTCTGAAATTCCAGAAGCTGAATTGCCTGAGCCGTTCAATTGTCCAAAGCAAGATTGTTTTCCAGACATATCGAAAACTCGCTCCTCGAGTCACCCTCGAACAATATTGTCATCAAGGATGCTGGATAATGACATTGTAGATTATGGAGAGTCTGCTAACAGAGAAGAAAGAATGTCAGTCCTTATCAATTCATCAATTGAAGCACTTAACCAGAAACCGGCAGTAGCCTCTCACATCTCTCAATCTTTCAGAAGGTTTTTTGTGCAAAAATCTATGGAAAATGGAGCAGATAGTATCCATAAAATTTTGCCATCAGATTCATTCCAAACCCCAGATCATCCAGTTTCTGAGTCAAACCTGAAGAAAAATTCCACACCCCCAATTAAGTTTGTTTCAGAAGCAGCTAATAGTGAAATATGTCCAACAATCTGTGCTACTCCAAGCAAAACCATCGAGTATACATCAACTCCAGTTAAACTAGTTTTTACTCCATCCAGGCTGATGATAGCAACTCCTGAAATTCCTCCACCCAAAAAACATTACATTAGCCCGGATGACAACTCTTCCAGTTCAATGAGCAAATTAGTTAGGCGTCCACCTCGTTCAAGGTCATTGAAATTTGATTCTCCAATGAAAAACAAGGAGACATGGGATGAAGATGATGCTGGTGGCTTATCAATCAATGATGATATTTTTGATATCCTCCCAAAGAATCTTCTCGAATTGATTCGAGAAAAGGAAAGAGTGACAATGGAGGAAAGAGATCCAGTTATCTCACAAGCAAAGAGACGGCAAAAAATGGTTGCCAGTCTCCCTAAGCTCTTTAACATGATTCACCTCTTATTACAATCAATGAAACGTTCTCTCATCGCAAAAGAGGAGCTAGTAAGCAAGATAATCGCAAGCCATCGTGATATTGTTGACAGAAGAGAAATTGAAGAACAATTGGATTTGTTAGTAGTACTAGTACCAGAATGGATTTCTGAGAAGCTGACTTCTGGTGGGGACATCCTCTTCAGCATTAATAAAACATTGAACCCTGGGACCATAAGAGCATCACTTGAAGAAGCAAAATGA 1785 0.4118 MSSSNDLSSTPLLRSKKNNNHNLLSSKPQSSADSISLTSKTPEKTAPRLRNRGVALSVVEIRNVAKGLQDQSHTQKHSDLDLVKGKSVKRRISMPSPLKSKTTADGPFTIPEKYEILCEFFHSLDSSIRLAQMKGRMPSFANIAPKIESLTDRRFTHSHLAQLKFILPEGILIKKVLMFDERTSSMKPDLHVTIDRDFILSAAKFLPKCESLCESMQLRLFFRIHLAEFCKSHPEGSEIPEAELPEPFNCPKQDCFPDISKTRSSSHPRTILSSRMLDNDIVDYGESANREERMSVLINSSIEALNQKPAVASHISQSFRRFFVQKSMENGADSIHKILPSDSFQTPDHPVSESNLKKNSTPPIKFVSEAANSEICPTICATPSKTIEYTSTPVKLVFTPSRLMIATPEIPPPKKHYISPDDNSSSSMSKLVRRPPRSRSLKFDSPMKNKETWDEDDAGGLSINDDIFDILPKNLLELIREKERVTMEERDPVISQAKRRQKMVASLPKLFNMIHLLLQSMKRSLIAKEELVSKIIASHRDIVDRREIEEQLDLLVVLVPEWISEKLTSGGDILFSINKTLNPGTIRASLEEAK 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0777 594 CDD Cdt1_c 470 591 IPR032054 -
Lal24g0777 594 Pfam DNA replication factor CDT1 like 111 174 IPR014939 -
Lal24g0777 594 MobiDBLite consensus disorder prediction 419 433 - -
Lal24g0777 594 Pfam DNA replication factor Cdt1 C-terminal domain 474 566 IPR032054 -
Lal24g0777 594 MobiDBLite consensus disorder prediction 1 51 - -
Lal24g0777 594 Gene3D - 464 594 IPR038090 -
Lal24g0777 594 PANTHER DNA REPLICATION FACTOR CDT1 24 594 IPR045173 GO:0003677|GO:0030174|GO:0071163
Lal24g0777 594 CDD Cdt1_m 95 276 IPR014939 -
Lal24g0777 594 MobiDBLite consensus disorder prediction 437 456 - -
Lal24g0777 594 MobiDBLite consensus disorder prediction 409 456 - -
Lal24g0777 594 SMART CDT1_2 110 246 IPR014939 -
Lal24g0777 594 MobiDBLite consensus disorder prediction 1 44 - -
Lal24g0777 594 SUPERFAMILY "Winged helix" DNA-binding domain 107 248 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0777 Lal-Chr24 6036417 6040270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0777 25 592 Core DNA Replication Machinery Family AT2G31270 40.273 1.18e-91 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0777 K10727 - gmx:100778818 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0777 24 6036417 6040270 Lal24g0777 24 6036417 6040270 ECH
Lal13g1012 13 7450350 7454027 Lal24g0777 24 6036417 6040270 LSH