Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0747 ATGCAAACCCACTCTTTCTCATACATATCTTCTTGTGGAAGTGAAAATGCTGATATAGTTGATGATGAAGAATCTATATCCCTCTCACTTGGCCTTCCTGGTCAGAAACACAATCCCAAAGTGTCTAACCCAAACCATTCTTTCTTTCACTTGCAAAACCCTACTAACTCTTATGACCAGAGTGGTGTAACAGTTGCCCTACACATTGGTCTTCCCAACACTACTGGTTCTTCACAAAACACTACCATCATTGCTACCCAATCTCACAATTTTTCTGAGGCTCCAATTCCGGGTCAATATTGGATCCCTACTCCAGAACAAATCCTTGTTGGTCCTACCCAGTTTTCTTGCACTGTCTGCAACAAAACATTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGGTCACAGTATAGGACAGGAGCTGAATCATTGAGAGGGTCAAAACCAGCATTATCAATGCTAAGGTTACCCTGTTATTGTTGTGCTGAGGGATGCAAGAACAACATAGAATATCCAAGGTCAAAACCACTCAAGGATTTTAGGACACTCCAAACACACTACAAGAGAAAACATGGAGAGAAACCATTTGAGTGCAGAAAGTGTGGGAAACCATTTGCAGTAAGAGGAGATTGGAGGACACATGAGAAGAATTGTGGGAAGCTTTGGTTTTGTATTTGTGGTTCTGATTTCAAGCATAAGAGATCCCTTAAAGACCATGTTCGTGCTTTTGGTGATGGTCATGCTCCACATACTGTGGCATCTCAGAGTTATAATCATTTAGGTGAAGAAAGATATGAAGATGATAATGAGGAAGAAGAATGTGATGATGAATATGATAACAGTGAAGATGTTGCTGTTACTTTCAATTAA 882 0.4048 MQTHSFSYISSCGSENADIVDDEESISLSLGLPGQKHNPKVSNPNHSFFHLQNPTNSYDQSGVTVALHIGLPNTTGSSQNTTIIATQSHNFSEAPIPGQYWIPTPEQILVGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRTGAESLRGSKPALSMLRLPCYCCAEGCKNNIEYPRSKPLKDFRTLQTHYKRKHGEKPFECRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVASQSYNHLGEERYEDDNEEEECDDEYDNSEDVAVTFN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0747 293 SUPERFAMILY beta-beta-alpha zinc fingers 89 136 IPR036236 -
Lal24g0747 293 PANTHER ZINC FINGER PROTEIN WIP6 3 285 - -
Lal24g0747 293 Gene3D Classic Zinc Finger 114 137 - -
Lal24g0747 293 PANTHER ZINC FINGER PROTEIN WIP2 3 285 IPR043584 GO:0003700|GO:0010468
Lal24g0747 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 220 IPR013087 -
Lal24g0747 293 SMART c2h2final6 163 195 IPR013087 -
Lal24g0747 293 SMART c2h2final6 115 137 IPR013087 -
Lal24g0747 293 SMART c2h2final6 200 220 IPR013087 -
Lal24g0747 293 MobiDBLite consensus disorder prediction 270 286 - -
Lal24g0747 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Lal24g0747 293 SUPERFAMILY beta-beta-alpha zinc fingers 185 220 IPR036236 -
Lal24g0747 293 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Lal24g0747 293 Gene3D Classic Zinc Finger 158 247 - -
Lal24g0747 293 Pfam Zinc finger, C2H2 type 115 134 IPR013087 -
Lal24g0747 293 MobiDBLite consensus disorder prediction 270 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0747 Lal-Chr24 5624734 5626353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0747 22 259 C2H2 Transcription Factor Family AT1G13290 68.127 5.44e-117 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal24g0747 zf-C2H2 0.0094 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0747 - - aprc:113870355 423.32