Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0746 ATGGATTTCACTGAGAAAATGCAGCGTTTTAAGATGGGGTTTCGTGATTACATCCAAACATTAGAAGAAGAACGCTGTAAGATTCAGGTTTTCTCCAAAGAGCTTCCTCTTTCTTTAGACTTGATCACACAAGCTATTGAAGCTTGTAGGCAACAGTTGTCTGGGACAACATCAGAGTATAATTTGAATGTGCAATCTGAGTGTTCAGGACAAACAACATCAATGGAAGGTCCTGTTTTGGAGGAGTTCATGCCAATTAAGAAAAGGGTATCCCTTGATTTTGGTGATGAAGATGAACAACATTCACATAAGTCTAAGGTTTCAAAGGACAATAATAAGAACAACACTGACAAAAAGAAATCAGATTGGCTAAAATCTGTTCAGTTATGGAATCCAAGTCCCCCAGCTGAAGAGGATGTGACTAGAAAAGTGTCTGGGATGGAAGTAAAGAGAAATGGAAGTGGTGGTGCTTTCCAGCCATTCCACAAAGAGGAGAAAGCTAGCCACACTATCGAATCATTATGTAAAGCACCCTCTTCAACCCCGGTAGCTGCAGCAAGTTCTACAGCGGTGCCGGTCACCAGAGACAACGCTGAAAGCAGCAAAAAAGAGGATAAAGATGGGGCTAGAAAGCAGCGCCGGTGCTGGTCACAGGAGTTGCATAAATGCTTCTTGCAGGCTCTTCAGAAGCTTGGCGGTGCAGATTCTGCCACTCCAAAACAAATCAGAGAGTTGATGAAGGTTGATAGTCTCACCAATGATGAAGTCAAAAGCCATTTGCAGAAATACCGGTTGCACACTAGAAGACCTAGTCCTATGAATCACAACAATGGAATTCCACAAACTGCGCCTTTTGTCCTTGTGGGGAACATTTTTGTTCAACCACATGACTATGCAACTGTAGCTACCTCAACAGCATCAGAAGAACTGGCCACAGTTGCAGCACCTGCTGGAATTTATGCACCGGTGGCCACACATCCTCCGGCTGTTTCACACGCACTAGGCGCTTCAATTAAGAAGCCGCCGTTTAAGAAAGTAAAGCATTCCGAGTATTCGCACTCAGAAGAAAGGGCAAATCAAAGTGAAGGGGCTGTTCATTCAAACTCCCCTGCCTCATCATCCTCCACACATACTACCACAACATCAATGAAAGTTTTGTAA 1161 0.4376 MDFTEKMQRFKMGFRDYIQTLEEERCKIQVFSKELPLSLDLITQAIEACRQQLSGTTSEYNLNVQSECSGQTTSMEGPVLEEFMPIKKRVSLDFGDEDEQHSHKSKVSKDNNKNNTDKKKSDWLKSVQLWNPSPPAEEDVTRKVSGMEVKRNGSGGAFQPFHKEEKASHTIESLCKAPSSTPVAAASSTAVPVTRDNAESSKKEDKDGARKQRRCWSQELHKCFLQALQKLGGADSATPKQIRELMKVDSLTNDEVKSHLQKYRLHTRRPSPMNHNNGIPQTAPFVLVGNIFVQPHDYATVATSTASEELATVAAPAGIYAPVATHPPAVSHALGASIKKPPFKKVKHSEYSHSEERANQSEGAVHSNSPASSSSTHTTTTSMKVL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0746 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 382 IPR044787 GO:0003700|GO:0006355
Lal24g0746 386 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 266 IPR006447 GO:0003677
Lal24g0746 386 SUPERFAMILY Homeodomain-like 210 269 IPR009057 -
Lal24g0746 386 MobiDBLite consensus disorder prediction 179 212 - -
Lal24g0746 386 MobiDBLite consensus disorder prediction 361 386 - -
Lal24g0746 386 MobiDBLite consensus disorder prediction 344 386 - -
Lal24g0746 386 MobiDBLite consensus disorder prediction 197 212 - -
Lal24g0746 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 268 IPR017930 -
Lal24g0746 386 MobiDBLite consensus disorder prediction 95 124 - -
Lal24g0746 386 Pfam Myb-like DNA-binding domain 213 264 IPR001005 -
Lal24g0746 386 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 382 - -
Lal24g0746 386 MobiDBLite consensus disorder prediction 179 196 - -
Lal24g0746 386 Gene3D - 210 268 - -
Lal24g0746 386 MobiDBLite consensus disorder prediction 344 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0746 Lal-Chr24 5601598 5603934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0746 1 373 G2-like Transcription Factor Family AT1G68670 43.077 2.22e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal24g0746 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0746 - - aprc:113872943 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0957 13 6780959 6783504 Lal24g0746 24 5601598 5603934 LSH