Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0732 ATGAATATACCGAAACACCGTACCGGTCGATCTACGTCGCTCAGAGACGCCACTGAATCCTCCAAGATGGAAGGAACTGGTAGCTTGGACTCTCTTGAATGGACCAAAATTGAGCCAATTTCGCGCTATGTGTCGAACGCGAATCTGGATTTCTTGCTCGAGGCGGAGCAAGTTGTCGCCGAAGGACATGGTGTTGTCCTCGTTAATACGGATGACGCGGGCACGTTGATTGTAACAAACTTTCGTCTTCTCTTTTTGAGTGAGGGAACTAGAAACATTATCGCCCTTGGAACAATACCACTGGCAACCATCGAGAAGTTTAACAAGATAGTTGTAAAGGTTCAGTCGAATGCTCGTCAGTTAGACAAGATACCACCACAAAGACTGCTCCAGGTGCTTGGTAAAGATATGAGAATTATAGTCTTTGGTTTCAGGCCTCGTACAAAACAGAGACGTGTGATATTTGATGCACTACAGAGGTGGATAAAGCCAACGAGATTCTGGGATCTTTATGCTTTTGCATCTGGACCTTCTAGGTTAAAGAACACTTCTCCACAGGTGCGCTTATTGGATGAGTATTTTCGACTTATTGGCAAAGGTTCCTATCGTGCATCAATCAACATGATTGAAAGTGGATCTTTCACCTTGTCAAATGACTTGTGGAGAATAAGCAGTGTGAACTTCAACTACAAAATGTGCCAGAGTTATCCATTTGCTTTGCTTGTTCCAAATATTGTTAGTGATGATGAAGTGCTCCAGGCTTCTAACTTTCGCGCAAGAGGTCGATTGCCTGTAGTTTCATGGTGTCACCCTGGTACTGGAGCAGTTCTTGCACGCTCATCTCAACCCTTAGTTGGTCTAATGATGAATATGAGGAGCAACATGGATGAAAAACTCGTGGCTGCTCTTTGCAACAAACTTGATGATGGTTCACAGAGAAAGCTATATATCGCAGATGCAAGACCAAGGAAAAATGCATTAGCTAATGGGGCCATGGGAGGTGGTTCGGAATCATCATCAAACTATTTTCAGTCTGAGATAGTCTTTCTTGGGATAGACAATATTCATGCAATGAGAGAGAGCTATGCTCGGCTCCGAGAGTACGTGGATACTCATGGCAGAGCATCATCAGATGGAATGTCATCTTTTTTGAGACATGGTGCATCCACATGGGGTGGAGGCAATTTAAGTAGTATGTCTACTTCAGTATCAACCCTAGGGGATAGTGGATGGTTACTGCATGTTCAAAATGTCTTGGCTGGTTCAGCTTGGATTGCTGCTCGTGTTGCTATGGAAATGGCTTCTGTTCTTGTACATTGCAGTGATGGATGGGATAGAACTAGTCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTACCGGACATTCGTAGGGTTTCAGGCACTTATTGAAAAAGACTGGCTCGCATTTGGTCATCCATTTTCTGATCGTGTGGGAATGCCATCTCTCTCTGGAAGTGGTAACATGCCTTCCGAGTTATCTAGACAGTCTTCAATTGGCAGTTTCTCATCATCATCCATGCGCCAGTCATCTGGGGCATTCACATCTCAACCACCAGCTTCATCTCACACACATAATTCAAACAACTACTCCCCCATTTTTTTGCAGTGGATTGACTGTGTTTCACAATTGTTGCGGATGTATCCTTCTGCTTTTGAGTTTTCTGCGGCTTTCCTGGTTGACTTCTTGGACTGCATGCTTTCTTGTCGTTTCGGAAATTTCTTCTGTAATTGTGAGAAAGAGAGGCTGCAAGGCAATGTTTTCGAAGCTTGTGGATGCTTGTGGGAATACTTGGCTGATTTACGTACATCAGGAGGTTCCCATGTGCATTATAATCCCTTTTATGAACCCCTGAAGCACAATGGTCCTCTTCTGCCCCCTGCAGCAGCATTGGCCCCAACCTTATGGCCCCAATTTCACCTTCGTTGGGCCTGTCCAGAAGAAGCAAAAGCAGGGGAGATTGAAGAACAATGTAGGAAGATAATTATGAAAAACTCAGAGATGCAGAAGGCTAAAGAAGTGGCAGAAAGGAAAGCTAAAGAAATCATGAATGCCATGGAGTCATTGAATGCAGAACTACGAATGGAGAAGCAGCAAAACAACTCAGCCATTAGCATTGCCAAGAGGACAAGCAAAGAAAACATGGCCATAAAGCGTGCAATTCAGTCAACTGGGTACAAGATTCACTTCTCCAGTAATGGTGATTGCATTGTTAACATTGAAAGCAACCCATTGGAAGCAGCACCAAACCATTTGTATTCATCCGCTGGTGACAGTGATGGAATCAATGCTATTGGTCGAGTATGTGAAACTTTATGCTCATTTCGCTCTGCAGATGGAGGGTGCAGGTGGCCAAATGGTGATTGTTCTCAATTAGGTAGCCAGTTTGTCGGTCTGAAAGCAAATTTTGATGCATTTGACCAACTGTCAATTAATGATAGTTATTTCAAGTCGGAGTAA 2487 0.4371 MNIPKHRTGRSTSLRDATESSKMEGTGSLDSLEWTKIEPISRYVSNANLDFLLEAEQVVAEGHGVVLVNTDDAGTLIVTNFRLLFLSEGTRNIIALGTIPLATIEKFNKIVVKVQSNARQLDKIPPQRLLQVLGKDMRIIVFGFRPRTKQRRVIFDALQRWIKPTRFWDLYAFASGPSRLKNTSPQVRLLDEYFRLIGKGSYRASINMIESGSFTLSNDLWRISSVNFNYKMCQSYPFALLVPNIVSDDEVLQASNFRARGRLPVVSWCHPGTGAVLARSSQPLVGLMMNMRSNMDEKLVAALCNKLDDGSQRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFLGIDNIHAMRESYARLREYVDTHGRASSDGMSSFLRHGASTWGGGNLSSMSTSVSTLGDSGWLLHVQNVLAGSAWIAARVAMEMASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFVGFQALIEKDWLAFGHPFSDRVGMPSLSGSGNMPSELSRQSSIGSFSSSSMRQSSGAFTSQPPASSHTHNSNNYSPIFLQWIDCVSQLLRMYPSAFEFSAAFLVDFLDCMLSCRFGNFFCNCEKERLQGNVFEACGCLWEYLADLRTSGGSHVHYNPFYEPLKHNGPLLPPAAALAPTLWPQFHLRWACPEEAKAGEIEEQCRKIIMKNSEMQKAKEVAERKAKEIMNAMESLNAELRMEKQQNNSAISIAKRTSKENMAIKRAIQSTGYKIHFSSNGDCIVNIESNPLEAAPNHLYSSAGDSDGINAIGRVCETLCSFRSADGGCRWPNGDCSQLGSQFVGLKANFDAFDQLSINDSYFKSE 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0732 828 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 214 653 IPR029021 -
Lal24g0732 828 ProSitePatterns Tyrosine specific protein phosphatases active site. 438 448 IPR016130 GO:0016311|GO:0016791
Lal24g0732 828 ProSiteProfiles Myotubularin phosphatase domain. 198 649 IPR010569 -
Lal24g0732 828 Gene3D - 63 162 IPR011993 -
Lal24g0732 828 Coils Coil 674 708 - -
Lal24g0732 828 SUPERFAMILY PH domain-like 52 174 - -
Lal24g0732 828 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 19 827 - -
Lal24g0732 828 PANTHER MYOTUBULARIN-RELATED 19 827 IPR030564 -
Lal24g0732 828 MobiDBLite consensus disorder prediction 1 26 - -
Lal24g0732 828 Pfam Myotubularin-like phosphatase domain 182 591 IPR010569 -
Lal24g0732 828 SMART gram2001c 38 111 IPR004182 -
Lal24g0732 828 CDD PTP-MTM-like 261 552 - -
Lal24g0732 828 MobiDBLite consensus disorder prediction 494 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0732 Lal-Chr24 5461402 5479644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0732 1 828 Protein tyrosine phosphatase (PTP) family AT3G10550 66.274 0.0 1127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0732 K18081 - gmx:100781842 1344.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0732 24 5461402 5479644 Lal24g0732 24 5461402 5479644 ECH
Lal13g0918 13 6398840 6415339 Lal24g0732 24 5461402 5479644 LSH