Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0724 ATGCACTGTCTTCAGAACATGCCTCGATCTTCTTTTTTGCCTTTCCAAACACTTACTCGCCACCCAAACAACACTCTTTTCTCTTCTATTTCCCTGGGAATTATCAACAGGTCTCATCAAAATCTAACTATGTCGCTTAAGTCTACATCTGGTTCTATACCGAGTGCAGACACAAGTAGCACCGACGTGGAGGAGGAAAAGTCTGAGATATATAGTAATAACATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAATTACAACTTCATCCGTCCCGACTTGATTGTGGGATCATGCCTACAGAGTCCTGAAGATGTTGACAAGCTTCGTAAGATTGGAGTGAAAACTATATTTTGCTTGCAACAGGATTCAGACCTAGAATATTTCGGAGTTGATATCAATACCATACGAGAATATGCCAAGACGTTCAATGACATTCAACACTTGCGTGCTGAGATAAGGGACTTTGATTCATTTGATTTACGGATGCGACTTCCAGCTGTACTTGGCGAATTATACAAGGCAGTAAATTCCAATGGAGGTGTGACATATATACACTGCACTGCTGGACTTGGAAGAGCTCCAGCTTTGGCATATATGTTTTGGGTCCAGGGTTATAAGCTTAATGATGCTCTTGGACTACTTCTGAGCAAAAGGTCATGCTTTCCAAAACTGGATGCCATAAAGAGTGCAACTGCTGATATTCTTACGGGACAAATTAAGAAGCCTGTGACTTTGTCATGGGGACACAGCAATTGCTCTACAGTGGAAATTTCAGGACTTGATATTGGATGGGGACAGAGAATACCTCTGAATTTCGATCCCAAACGCGGTTCGTGGTTTCTCAACAGAGAATTGCCTGAAGGACACTACGAGTACAAGTACATTGTTGATGGTCAATGGACATGCAATAATGATGAGCTTGTGACATCTCCTAACAAAGATGGCCATGTAAATAATTACATTAAAGTTCTCGATGATCCGAACAGCATTCGTTCCTCCCTTTGGGATAGATTGACTGGTGATGATCCCGATCTGACAAAGGACGAACGACTCAGAATTAGAGAGTTTCTTGAAGCTTGTCCTAATGATAGCCAACAGTGA 1122 0.418 MHCLQNMPRSSFLPFQTLTRHPNNTLFSSISLGIINRSHQNLTMSLKSTSGSIPSADTSSTDVEEEKSEIYSNNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQSPEDVDKLRKIGVKTIFCLQQDSDLEYFGVDINTIREYAKTFNDIQHLRAEIRDFDSFDLRMRLPAVLGELYKAVNSNGGVTYIHCTAGLGRAPALAYMFWVQGYKLNDALGLLLSKRSCFPKLDAIKSATADILTGQIKKPVTLSWGHSNCSTVEISGLDIGWGQRIPLNFDPKRGSWFLNRELPEGHYEYKYIVDGQWTCNNDELVTSPNKDGHVNNYIKVLDDPNSIRSSLWDRLTGDDPDLTKDERLRIREFLEACPNDSQQ 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0724 373 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 370 - -
Lal24g0724 373 Gene3D Immunoglobulins 245 335 IPR013783 -
Lal24g0724 373 Gene3D Protein tyrosine phosphatase superfamily 85 363 IPR029021 -
Lal24g0724 373 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 370 IPR030079 GO:0005982|GO:0007623|GO:0019203
Lal24g0724 373 MobiDBLite consensus disorder prediction 46 66 - -
Lal24g0724 373 Pfam Glycogen recognition site of AMP-activated protein kinase 249 332 IPR032640 -
Lal24g0724 373 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 203 IPR000387 GO:0016311|GO:0016791
Lal24g0724 373 SUPERFAMILY E set domains 249 331 IPR014756 -
Lal24g0724 373 CDD DSP_laforin-like 91 236 IPR045204 GO:0019203|GO:0046838
Lal24g0724 373 CDD E_set_AMPKbeta_like_N 249 330 - -
Lal24g0724 373 SMART dsp_5 92 240 IPR020422 GO:0006470|GO:0008138
Lal24g0724 373 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 89 232 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0724 Lal-Chr24 5398480 5411855 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0724 91 367 Protein tyrosine phosphatase (PTP) family AT3G52180 69.892 7.36e-148 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0724 - - gmx:100804010 608.216