Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0712 ATGGAGGCACATATTTTTCGCTTTCTTAAGATTGTGGGTGTTGGATACAAAGCTAGAGCTGAGAATGCAGGACGCCTATTGTATCTCAAATTGGGATACAGTCACGAGGTTGAGTTGTCTGTGCCTCCTGCAGTCCGTGTTTTCTGCTTCAAAAACAATGTAATTTGCTGCACTGGATTAGACAAGCAAAGGGTGCACCAGTTTGCTGCTACTGTTCGGAATTGTAAGCCACCCGAAGTTTACAAAGGCAAGGGCATAATGTATGCTGATGAAGTTATCAAGAAGAAACAAGGAAAGAAGTTGTCCAATAACACCAACATGGAAGCACTAGAGGAAATCTCTTTGGGTGGGTCCAAAGAGCAAAACAACATTGTCAAAGGGAAAAGAACCAAAAGGGTAAGGCCACAATCCCCTATTCCCTTCTCCATCACTGCTATTTCTTCCACTGGAGAAAAAGATGATTGCAACAATGTTGACAATAACAACAACAACAAAGATTGTAACAATAACAATAACAACAGCACTCCTACAACTTCTTCTGCAGGGTTACAAGACAACATTGATGAAGAAGAGGTTATGGCTAATTGCTTGATCCTTCTAGCACAAGGAGAACCCCGGGAATCACCGAAACATGCTGCACCCCGTGGTGGCGAAGACTTGACCAGAGGAATGAACTATAGTAAGTACAGCAGTAGAAAATTCTTGGAAGCTGCAGGAATAGGAGGGTCTGAATCAAGAGCAGGGTATTATGTATATGAATGCAAGACATGTAGTAGAACATTCCCTTCATTTCAAGCACTTGGAGGCCATAGGGCTAGTCACAAGAAACCTAAGGCCATAGCTTCTGCTGCAATAGCAATTGGCATTCAAGAGAAAAAACAAGAGGAAGAGTTCCAATTCAAGACCAATAACAATGGATCACTTTCTCTTCAATTGAATAGCAGAGGGAATTTGTATAGCAATGAAAATAATAAGTCCAAGGTGCATGAATGCTCCATTTGTGGTGCTGAATTCACATCAGGACAAGCATTGGGTGGCCATATGAGGCGGCACCGCGCACCGGTTGGGACTAACACCACACTCTCTTTGACACCAATGGCTTTGGAACCGGAAGAAGGTCAACCACCTAGAAAAAGAAGGAATGTATTGTCTTTGGATTTGGATCTTAACCTTCCTGCACCAGAACCAGAACATGAACCTAGAGAATCCAACTTTGCCTTTGCATCTAAGCAACAACAAAGACAAAAACCACAACCACAACCACAACAACAACAACAACAACAGCAACAACAACAACAACAGCAACAGCAGCAACAGCAATCTAGTATTGTCTTCTCCACCCCAGCTTTGTCGTTGTTAGTTAGGCATGACAAAAGCAACCTTTGA 1386 0.4264 MEAHIFRFLKIVGVGYKARAENAGRLLYLKLGYSHEVELSVPPAVRVFCFKNNVICCTGLDKQRVHQFAATVRNCKPPEVYKGKGIMYADEVIKKKQGKKLSNNTNMEALEEISLGGSKEQNNIVKGKRTKRVRPQSPIPFSITAISSTGEKDDCNNVDNNNNNKDCNNNNNNSTPTTSSAGLQDNIDEEEVMANCLILLAQGEPRESPKHAAPRGGEDLTRGMNYSKYSSRKFLEAAGIGGSESRAGYYVYECKTCSRTFPSFQALGGHRASHKKPKAIASAAIAIGIQEKKQEEEFQFKTNNNGSLSLQLNSRGNLYSNENNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTNTTLSLTPMALEPEEGQPPRKRRNVLSLDLDLNLPAPEPEHEPRESNFAFASKQQQRQKPQPQPQQQQQQQQQQQQQQQQQQQSSIVFSTPALSLLVRHDKSNL 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0712 461 ProSitePatterns Zinc finger C2H2 type domain signature. 331 351 IPR013087 -
Lal24g0712 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 279 IPR013087 -
Lal24g0712 461 MobiDBLite consensus disorder prediction 150 182 - -
Lal24g0712 461 Gene3D Classic Zinc Finger 250 351 - -
Lal24g0712 461 PRINTS Ribosomal protein L6 signature 23 39 IPR019906 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lal24g0712 461 PRINTS Ribosomal protein L6 signature 65 86 IPR019906 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lal24g0712 461 PANTHER ZINC FINGER PROTEIN ZAT5 118 450 - -
Lal24g0712 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 329 351 IPR013087 -
Lal24g0712 461 MobiDBLite consensus disorder prediction 203 224 - -
Lal24g0712 461 Pfam Ribosomal protein L6 12 88 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lal24g0712 461 Pfam C2H2-type zinc finger 251 277 - -
Lal24g0712 461 Pfam C2H2-type zinc finger 328 354 - -
Lal24g0712 461 ProSitePatterns Zinc finger C2H2 type domain signature. 254 274 IPR013087 -
Lal24g0712 461 SUPERFAMILY Ribosomal protein L6 8 100 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lal24g0712 461 ProSitePatterns Ribosomal protein L6 signature 1. 78 86 IPR002358 GO:0003735|GO:0005840|GO:0006412
Lal24g0712 461 MobiDBLite consensus disorder prediction 126 145 - -
Lal24g0712 461 MobiDBLite consensus disorder prediction 405 442 - -
Lal24g0712 461 MobiDBLite consensus disorder prediction 343 442 - -
Lal24g0712 461 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 118 450 - -
Lal24g0712 461 SMART c2h2final6 329 351 IPR013087 -
Lal24g0712 461 SMART c2h2final6 252 274 IPR013087 -
Lal24g0712 461 Gene3D - 6 101 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lal24g0712 461 SUPERFAMILY beta-beta-alpha zinc fingers 251 351 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0712 Lal-Chr24 5314441 5319520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0712 107 450 C2H2 Transcription Factor Family AT5G04390 41.927 4.89e-74 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal24g0712 Ribosomal_L6 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0712 - - lja:Lj5g3v1698900.1 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0117 20 767694 768548 Lal24g0712 24 5314441 5319520 ECH
Lal1g1797 1 20297015 20297863 Lal24g0712 24 5314441 5319520 ECH
Lal13g0896 13 6178285 6180093 Lal24g0712 24 5314441 5319520 ECH
Lal2g0316 2 1887267 1888184 Lal24g0712 24 5314441 5319520 ECH
Lal9g0297 9 1909193 1910110 Lal24g0712 24 5314441 5319520 ECH
Lal1g0404 1 2487392 2488330 Lal24g0712 24 5314441 5319520 ECH
Lal10g1218 10 18542256 18543194 Lal24g0712 24 5314441 5319520 ECH
Lal24g0712 24 5314441 5319520 Lal24g0712 24 5314441 5319520 ECH
Lal12g0788 12 6129885 6130991 Lal24g0712 24 5314441 5319520 LSH
Lal13g0896 13 6178285 6180093 Lal24g0712 24 5314441 5319520 LSH