Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0683 ATGGCGGAAGCTACTAGTCCACCACATGATGATCATGAAAGCGGCGGCGATCAGAGTCCTCACGGTTGTTCCTCCGCCGCAAGGGAGCAGGACCGTTTCCTTCCCATTGCCAACATCAGCCGCATTATCAAGAAGGGTCTTCCTGCCAATGGCAAGATTGCTAAAGATGCTAAGGACACTATGCAAGAATGTGTTTCGGAATTCATTAGTTTCATTACTAGCGAGGCGAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACTATTAATGGAGATGATTTGCTATGGTCTATGGCTACTTTAGGATTTGAAGACTACATTGAGCCACTTAAGGTGTACCTCCATAGGTACAGAGAGGGTGACACTAAAGGATCAGGGAGAAGTGGTGATGGACCTGCTAGACGAGATCAAGGTGGCCTTGCAGGTCAAAATTCTCAGCTTGTTCATCAGGGTTCGCTGAACTATATGGATTCAGTGAAAGAACATCTTTGTGACTTTGTCTATTGGGATATGAAGGTGAATTCACATATTGCTATTCCTTCAATGCAAAGCCATGAATAA 558 0.448 MAEATSPPHDDHESGGDQSPHGCSSAAREQDRFLPIANISRIIKKGLPANGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWSMATLGFEDYIEPLKVYLHRYREGDTKGSGRSGDGPARRDQGGLAGQNSQLVHQGSLNYMDSVKEHLCDFVYWDMKVNSHIAIPSMQSHE 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0683 185 MobiDBLite consensus disorder prediction 120 142 - -
Lal24g0683 185 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Lal24g0683 185 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 152 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lal24g0683 185 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Lal24g0683 185 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Lal24g0683 185 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Lal24g0683 185 SUPERFAMILY Histone-fold 30 150 IPR009072 GO:0046982
Lal24g0683 185 MobiDBLite consensus disorder prediction 1 27 - -
Lal24g0683 185 PANTHER BNAA04G21250D PROTEIN 1 152 - -
Lal24g0683 185 MobiDBLite consensus disorder prediction 1 17 - -
Lal24g0683 185 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lal24g0683 185 Gene3D Histone, subunit A 20 155 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0683 Lal-Chr24 5073185 5076739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0683 12 150 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.761 1.03e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lal24g0683 CBFD_NFYB_HMF 7.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0683 K08065 - gmx:100779577 266.159