Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0676 ATGTATTGGGGAACTATGGAAGGAAACATGGGTTGGAGAAAGGGACCTTGGACTTCTGAAGAGGACATGTTGCTCATTGATTATGTCAAACAACATGCTGAAGGTAGATGGAATTCTGTTGCTAGGCTTACAGGACTGCAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTACCTGAGACCAGACCTCAAGAGGGGTCAAATAACACCACAAGAAGAGAGCATAATTCTAGAGCTGCATGCTAGGTGGGGAAACAGATGGTCAGCAATTGCAAGAAGCTTGCCCGGAAGAACGGACAATGAGATAAAGAATTATTGGAGAACTCATTTCAAGAAAAAGACTAGAAATCTCTCTCATGTTGCCGAAAAGGCGAAAAATCGCCTCTTGAAGAAGCAGCAATTTCAGCAACATCAGCAGTTAAAGAAACATCAGGTTCAACAACAGCAGCAGCAACAACAACAACTGCAATTCAACTTGGACATGAAAGGGATCATGAACTTGCTTAATGAAAATGACCACATGGCACCTTCTATATCTCCAGAGACACAAGAAATGGTGAACATGTACCCAAACACAACAACATATGATGAGGGCTATTTCTATTCTATGCTCAATGGAAATACATTTGCATCAAACTTCTCAAATGAAGAAACTTTGTGGGATGGGCATTGGAACTTGGACGATGTTCTTAACAATTTTAGTGCAGCTAGTGCTACAAGCAAAACCACTATACACAACTTAGTTGCTCCCTATTGTTAA 765 0.4105 MYWGTMEGNMGWRKGPWTSEEDMLLIDYVKQHAEGRWNSVARLTGLQRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSAIARSLPGRTDNEIKNYWRTHFKKKTRNLSHVAEKAKNRLLKKQQFQQHQQLKKHQVQQQQQQQQQLQFNLDMKGIMNLLNENDHMAPSISPETQEMVNMYPNTTTYDEGYFYSMLNGNTFASNFSNEETLWDGHWNLDDVLNNFSAASATSKTTIHNLVAPYC 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0676 254 Gene3D - 71 115 - -
Lal24g0676 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal24g0676 254 CDD SANT 16 61 IPR001005 -
Lal24g0676 254 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal24g0676 254 SMART sant 66 114 IPR001005 -
Lal24g0676 254 SMART sant 13 63 IPR001005 -
Lal24g0676 254 CDD SANT 71 112 IPR001005 -
Lal24g0676 254 Gene3D - 14 66 - -
Lal24g0676 254 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal24g0676 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal24g0676 254 PANTHER MYB TRANSCRIPTION FACTOR 10 246 - -
Lal24g0676 254 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 10 246 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lal24g0676 254 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal24g0676 254 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lal24g0676 254 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0676 Lal-Chr24 5021499 5023332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0676 11 254 MYB Transcription Factor Family AT3G24310 54.373 9.58e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal24g0676 Myb_DNA-binding 6.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0676 K09422 - gmx:100813935 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0676 24 5021499 5023332 Lal24g0676 24 5021499 5023332 ECH
Lal13g0870 13 5961973 5963394 Lal24g0676 24 5021499 5023332 LSH