Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0668 ATGGATTCAGATGAAGGAAAGCTTTTCATCGGTGGAATTTCATGGGAAACTACTGAGGACAAGCTCAAAGACCATTTCACCAATTACGGCGACGTTTTGAACATTTCTGTTATGCGTGACAAGAACACTGGAAAACCTAGAGGTTTCGCTTTTGTTGTTTTTTCAGATCCTACTATTCTAGATAGGGTTCTTCAGGATAAACATGTTATTGATGGAAGAACGGTTGATGCCAAGAGGGCCCTCTCGAGAGAGGATCAACAAATTTCTGGCAATTCCAGATCTGGAAATCCCAATTCTGCTCTGCATTCTGGAAATGGTGGAAATATGAAGACCAAAAAGATATTTGTTGGAGGGTTGCCTCCCACCCTGTCTGAAGAAAATTTCCGTCAGTACTTTGAGTCCTTTGGCAATGTGACTGATGTCGTAGTCATGTACGACCAGAGTACTGGACGACCACGAGGATTTGGGTTTATTTCTTTTGATACTGAGGATGCTGTTGAAAGGGTTTTGCACAAGACATTTCATGATTTAAATGGTAAACAAGTAGAGGTAAAGCGTGCGCTTCCCAAGGATGCCAATCCTGGTTCAGGTGGTCGAATGATGAGTGGTGCTGGAGGTGGTAATTCCGGAGGTGGTGGCTATCAGGGGTATGGAGCATCTGGTGGCAACCAAAATGCATACGATGGCCGTATGGATTCTAGTAGGTATATTCAATCTCAAAGCAATGCTGGTGGATTCCCACCTTATGGTTCTTCTGGCTATAGTGCTCCTGGGTATGGGTTTGGTCCTGCTAATAATGCCATTGGTTACAGTGCATATGGAAGTTATGGTGCTGCTGCTGGGTATGGTGGACCTGCTGGTGCAACATATGGGAATCCAAATGTCCCTAATGCTGCCTATGCTGGTGGTCCCCCAGGTGGCCCTAGGAGTTCATGGCCTGCTCAGGCTCCCTCTGGTTATGGATCTATGGGCTATGGGAACACTGCTCCTTGGGGTGCTCAAAGTGGCGGTGCTGGATCTGGTGGTGCTGGACCTGGTTCGGCTACTGCTGGTCAATCCCCTAGTGGAGCTGCTGGATATGGGAGTCAAGGATATGGATATGGTGGGTATGATGGAAGTGATAGTTCTTATGGGAATCCTGGTGCATATGGTGCTGTTGGAGGGCGTACTGGGAGTGCATCCAATACTAATGCTAGTGGTCCTGATGGAAGTGAACTACAAGGTAGTGGCGGCAGTGGAAGCTACATGGGCACTGGCTACGGGGATTCAAATGGAAATTCAGGTTATGGAAATGCAGCTTGGAGATCTGAACATTCTCAGCCCTCTGGAAATTATGGGACTCATGGAAATGGCTCACATGGTGGGCAAGTTGGTTATGGTGGTGGCTATGGCGGTTCTCAGTCTCGCCAATCCCAACAGCAGTAA 1425 0.4744 MDSDEGKLFIGGISWETTEDKLKDHFTNYGDVLNISVMRDKNTGKPRGFAFVVFSDPTILDRVLQDKHVIDGRTVDAKRALSREDQQISGNSRSGNPNSALHSGNGGNMKTKKIFVGGLPPTLSEENFRQYFESFGNVTDVVVMYDQSTGRPRGFGFISFDTEDAVERVLHKTFHDLNGKQVEVKRALPKDANPGSGGRMMSGAGGGNSGGGGYQGYGASGGNQNAYDGRMDSSRYIQSQSNAGGFPPYGSSGYSAPGYGFGPANNAIGYSAYGSYGAAAGYGGPAGATYGNPNVPNAAYAGGPPGGPRSSWPAQAPSGYGSMGYGNTAPWGAQSGGAGSGGAGPGSATAGQSPSGAAGYGSQGYGYGGYDGSDSSYGNPGAYGAVGGRTGSASNTNASGPDGSELQGSGGSGSYMGTGYGDSNGNSGYGNAAWRSEHSQPSGNYGTHGNGSHGGQVGYGGGYGGSQSRQSQQQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0668 474 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lal24g0668 474 SMART rrm1_1 113 185 IPR000504 GO:0003723
Lal24g0668 474 MobiDBLite consensus disorder prediction 80 108 - -
Lal24g0668 474 SUPERFAMILY RNA-binding domain, RBD 110 219 IPR035979 GO:0003676
Lal24g0668 474 SUPERFAMILY RNA-binding domain, RBD 3 108 IPR035979 GO:0003676
Lal24g0668 474 MobiDBLite consensus disorder prediction 393 451 - -
Lal24g0668 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lal24g0668 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Lal24g0668 474 MobiDBLite consensus disorder prediction 84 106 - -
Lal24g0668 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 173 IPR000504 GO:0003723
Lal24g0668 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lal24g0668 474 Gene3D - 106 229 IPR012677 -
Lal24g0668 474 Gene3D - 4 88 IPR012677 -
Lal24g0668 474 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 472 - -
Lal24g0668 474 MobiDBLite consensus disorder prediction 336 357 - -
Lal24g0668 474 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Lal24g0668 474 MobiDBLite consensus disorder prediction 393 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0668 Lal-Chr24 4977160 4981271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0668 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.365 3.90e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0668 K14411 - gmx:100811267 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0668 24 4977160 4981271 Lal24g0668 24 4977160 4981271 ECH
Lal12g0741 12 5626715 5630360 Lal24g0668 24 4977160 4981271 LSH