Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0659 ATGGATCTTGTAAGCAAAAGATACTTGATATATGTGTCACAACATGAAGCACATTCTCCAATCACAAGTCAAGGGAGTTCTTCAATCTTTCACCCTATTATGCATCATTCCAGCACAAGTTTCCCAATCATAGCAATAGCTATAATAGGAATATTATCCACAACTTTCTTGCTTGTGAGCTACTACATCTTTGTGATCAAGTGCTGCCTCAATTGGCACAACATTGATCTTCTAAGACGTTTCTCTCCATCAACGAGGCGCGAAGATCGATCACCTCGAGGACTAAATGAGGCACTGATTAGATTAATCCCATTGATTCAATACAAGACCAAACAAGAAGGTAGTAGCATTAGTAGTAATAGAGAGTTTGGAGAAAGAAGCTTTTGTGAATGTGCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAGGCTTAGGATTATACCAAATTGCAGCCATGTGTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGCTAACTGTCCACTTTGTAGAACCAGCATTTCTTTGACAAGCATATTCCAAATTGACAAGTATATTCCAAATGAAGATTTTGTTGTGATTGAATTATGCAATAATGATAGAGGCCAAAACAATGTTTTGGAGTTACTACCAACATGTCATATTATTAATCCATCACAAAGAAGGAAAGTGCATAATAAAGTGATAAGCATGGGAGATGAGTGTATTGATATTAGAGCTTATGACCAGTTTTCAGTGCAACCTATAAGGAGGTCTTTTTCAATGGACTCATCAGGGGATAGACACTTCTATTTGACAGTTCAAGAAGCATTGCAGCAGAGCAAGCAAGTCATTGATGAGGTTAGTTCAATTGAAGGATGCAGTGGTAGTGGTAGTGGTAGTGGTAGAGCCAAGAGATCATTCTTTTCCTTTGGACATCTTAGTAGATCCAAAAGTTCTGTCCAACCTGTTTATTTGGACCCTTGA 972 0.3786 MDLVSKRYLIYVSQHEAHSPITSQGSSSIFHPIMHHSSTSFPIIAIAIIGILSTTFLLVSYYIFVIKCCLNWHNIDLLRRFSPSTRREDRSPRGLNEALIRLIPLIQYKTKQEGSSISSNREFGERSFCECAVCLNEFQEDERLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTSIFQIDKYIPNEDFVVIELCNNDRGQNNVLELLPTCHIINPSQRRKVHNKVISMGDECIDIRAYDQFSVQPIRRSFSMDSSGDRHFYLTVQEALQQSKQVIDEVSSIEGCSGSGSGSGRAKRSFFSFGHLSRSKSSVQPVYLDP 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0659 323 SUPERFAMILY RING/U-box 130 179 - -
Lal24g0659 323 CDD RING-H2_PA-TM-RING 130 173 - -
Lal24g0659 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 178 IPR013083 -
Lal24g0659 323 PANTHER RING-H2 FINGER PROTEIN ATL16 26 322 - -
Lal24g0659 323 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Lal24g0659 323 Pfam Ring finger domain 130 173 IPR001841 -
Lal24g0659 323 PANTHER RING-H2 FINGER PROTEIN ATL16 26 322 IPR044600 GO:0016567|GO:0016740
Lal24g0659 323 SMART ring_2 131 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0659 Lal-Chr24 4859134 4860105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0659 32 323 C3H Transcription Factor Family AT1G04360 44.134 7.35e-77 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0659 - - gmx:100794749 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0659 24 4859134 4860105 Lal24g0659 24 4859134 4860105 ECH