Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0636 ATGGATCATGTTATTGGTGGAAAATTCAAGCTTGTGAGGAAGATTGGAGCTGGATCATTTGGAGAGCTTTATTTGGGTGTTAATGTACAAAGTGGGGATGAAGTGGCTGTCAAGTTGGAACCTGCAAAGACCAAGCATCCTCAACTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGGGGAACTGGAATTCCCCATTTGAAATGGTTTGGAGTTGAGGGCGACTACAATGTAATGGTAATTGACCTTCTTGGACCAAGTCTTGAAGACTTGTTTAACTATTGCAACCGAAAATTATCTCTGAAAACAGTTCTGATGCTTGCAGATCAGTTGATAAACAGAGTTGAGTACATGCACTCCCGGGGTTTTCTGCACCGTGATATAAAGCCTGATAACTTTTTGATGGGTTTAGGCCGCAAGGCAAATCAGGTATATGTAATTGATTATGGTCTTGCAAAAAAGTATAGGGATCTTCAAACACATAAGCATATACCATACAGACCCTCTCCTTTTCTTTCATTAGTGATCACAGTACTTTCTTTCAGGGAAAACAAGAACCTCACTGGAACTGCTCGGTATGCAAGTGTTAATACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTGCTCATGTATTTTTTGAGAGGAAGTCTCCCTTGGCAAGGCATGAAAGGTGGAACTAAAAAGCAGAAATATGACAAGATAAGTGAAAAGAAGATGCTTACTCCGATAGAGGTCTTATGCAAGTCATACCCATTAGAATTCACGACATACTTCCATTATTGCCGATCGTTAAGGTTTGAAGATAAGCCTGATTATTCATATCTTAAGAGACTCTTTCGGGACCTATTCATTAGAGAAGGTTATCAGTTTGATTATGTATTTGATTGGACTATCTTGAAGTATCCACAAATTGGATCCAGTTCTCGAGCTCGACCAAGTGGAAAGCCTGCAATAAACCTGGGACTGGGGCTGTCAGGAGAGAAAGTAGAACGACCTTCAGGTGTGCCAGAGGTTCGGGATAGATTGTCTGGTGCACTCGAGCAATTTGCAAGAAGGAATAGGCCGACTAGCTCTGGGCTTGGTCTGCATGGTGAAAATTCTAGGCATAGGTCTTCAGATGATGTGCCATCCTCCAAAGATGTGCAAGCTGATTCTGAGAGGACTCGTAGCTCTTCTCGTAATGGTAGTACCTCAAAACGGCCTGTCGTATCAAGCAGCCGACCAAGCACATCTGGTGAACCTAGTGAAAGCCGGTCTAGTCGACTGCTCTCAAGCAGTGGCCGTCTATCTACAACTCAGAGGATTCATGCAGGTTTAGAGTCCAAAGCACCCCTTACTCAGCGGATTCAAGCAGGTTTAGAGTCCAAACCATCCCTTACTCAGAGGATCCAAGCAGGTTTAGATTCCAAAACATCCCTTACTCGTGCTTCAGGGTCAAGAGGTGGCCGTGATGATACACTCAGGAGCTTTGAACTTCTGTCAATTGGTACAGGAAAAAGGAAATGA 1533 0.4292 MDHVIGGKFKLVRKIGAGSFGELYLGVNVQSGDEVAVKLEPAKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKLSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHIPYRPSPFLSLVITVLSFRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGMKGGTKKQKYDKISEKKMLTPIEVLCKSYPLEFTTYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRARPSGKPAINLGLGLSGEKVERPSGVPEVRDRLSGALEQFARRNRPTSSGLGLHGENSRHRSSDDVPSSKDVQADSERTRSSSRNGSTSKRPVVSSSRPSTSGEPSESRSSRLLSSSGRLSTTQRIHAGLESKAPLTQRIQAGLESKPSLTQRIQAGLDSKTSLTRASGSRGGRDDTLRSFELLSIGTGKRK 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0636 510 MobiDBLite consensus disorder prediction 355 510 - -
Lal24g0636 510 PANTHER CASEIN KINASE-RELATED 1 456 - -
Lal24g0636 510 Gene3D Transferase(Phosphotransferase) domain 1 1 327 - -
Lal24g0636 510 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lal24g0636 510 ProSiteProfiles Protein kinase domain profile. 9 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0636 510 SMART serkin_6 9 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0636 510 MobiDBLite consensus disorder prediction 375 396 - -
Lal24g0636 510 MobiDBLite consensus disorder prediction 397 446 - -
Lal24g0636 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lal24g0636 510 MobiDBLite consensus disorder prediction 460 488 - -
Lal24g0636 510 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 456 - -
Lal24g0636 510 MobiDBLite consensus disorder prediction 359 374 - -
Lal24g0636 510 Pfam Protein kinase domain 10 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0636 510 CDD STKc_CK1_delta_epsilon 8 297 - -
Lal24g0636 510 SUPERFAMILY Protein kinase-like (PK-like) 4 305 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0636 Lal-Chr24 4674092 4679614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0636 5 234 EF-hand Containing Proteins AT3G50530 26.087 3.30e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lal24g0636 Pkinase 8.3e-24 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0713 12 5403266 5408777 Lal24g0636 24 4674092 4679614 LSH
Lal13g0817 13 5492538 5497947 Lal24g0636 24 4674092 4679614 LSH