Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0635 ATGGACCCTACGGGGTGCTGGTTTAGCAAGTTCAAGTTAAAGGATAAAATGCAATCTTCAAAACACAAGGAAACTTCAGGCATTGCAAAAGTAGGGTCAAATCCCTCAACAAATGAAGAAGCTCCTTCAAATGTCACCAAACAGAAGGTTGAAGCTGCAAAGCAGTACATAGAAAACCATTATAAGAAGCAGATGAAGGACCTTCAGGAGAGGAAGGAACGACGTAATATGCTAGAGAAAAATTTGGCTGATGCTGATGTCTCTGAGGAAGAGCAGCACAACTTGCTTAAGTATTTTGAGAAAAAGGAAAGGGAATACATGCGCCTTCAGAGGCATAAGATGGGGGCTGATGATTTTGAGCCCTTGACTATGATAGGGAAGGGTGCATTTGGAGAGGTCAGAATTTGCCGAGAGAAGGCAACTGGTCACATATATGCTATGAAGAAGCTTAAGAAGTCTGAGATGCTTCGCAGAGGCCAGGTTGAACATGTAAAAGCTGAGAGAAACCTACTCGCAGAAGTTGACAGCAATTGCATTGTTAAGCTTTATTTTTCCTTTCAAGATGAAGAATATTTATACCTCATAATGGAGTATCTACCGGGTGGTGATATGATGACATTGCTCATGCGGAAGGATATCCTAACAGAAGACGAGGCCAAGTCCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCGATTCATAAACATAATTATATTCATAGGGATATCAAGCCTGACAACTTGCTGCTAGATAAAAATGGTCATATGAAATTATCAGATTTTGGATTATGTAAACCTCTAGACTGCAGTAATCTTCAGGAAAAGGACTTCTCTATTGGTGGAAATAGAAGTGGATCCCTCCAGAGCGATGGACGGCATGTAACTCCTAAAAGAACTCAGCAGGAGCAACTGCAACATTGGCAGAAAAATAGGCGAATGCTTGCATATTCTACTGTTGGAACACCTGACTATATTGCCCCTGAAGTTCTACTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCTCTGGGAGCTATAATGTATGAAATGCTAGTGGGATATCCACCCTTTTATTCAGATGAACCGATGTTGACTTGTAGAAAGATAGTAAATTGGAGAACTCATTTAAAATTTCCAGAAGAAGCTAGGCTATCAGCAGAAGCAAAGGATCTTATTAGTCAACTCCTATGTAATGTGGACCAGAGGCTTGGAACAAAAGGGGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTATTGAATGGGACAGATTGTACCAATTGAAAGCTGCTTTCATTCCTGAGGTCAATGATGAATTAGACACTCAAAATTTTGAGAAGTTTGAAGAGGTGGACAACCAAACCCCAACTCCCTCAAAATCAGGCCCATGGAAAAAGATGCTGTCGTCTAAAGATGTCAACTTTGTTGGGTACACATATAAAAACTTTGAAATTGTCAATGATGATCATCTACCTGGAATAGCTGAATTGAAGAAGAGCACAAAAACTAAACGGCCTTCTATTAAGACCCTATTTGACGACGAATGGACTAGGGCTTCCGACCAACCTGTCCAAGGGAACTCAGCCGGAAGTTCCTAA 1602 0.412 MDPTGCWFSKFKLKDKMQSSKHKETSGIAKVGSNPSTNEEAPSNVTKQKVEAAKQYIENHYKKQMKDLQERKERRNMLEKNLADADVSEEEQHNLLKYFEKKEREYMRLQRHKMGADDFEPLTMIGKGAFGEVRICREKATGHIYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYFSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTEDEAKSYVGETVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCSNLQEKDFSIGGNRSGSLQSDGRHVTPKRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRTHLKFPEEARLSAEAKDLISQLLCNVDQRLGTKGADEIKAHPWFKGIEWDRLYQLKAAFIPEVNDELDTQNFEKFEEVDNQTPTPSKSGPWKKMLSSKDVNFVGYTYKNFEIVNDDHLPGIAELKKSTKTKRPSIKTLFDDEWTRASDQPVQGNSAGSS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0635 533 MobiDBLite consensus disorder prediction 282 301 - -
Lal24g0635 533 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Lal24g0635 533 MobiDBLite consensus disorder prediction 24 47 - -
Lal24g0635 533 SUPERFAMILY Protein kinase-like (PK-like) 98 470 IPR011009 -
Lal24g0635 533 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Lal24g0635 533 SMART serkin_6 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0635 533 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lal24g0635 533 PANTHER SERINE/THREONINE-PROTEIN KINASE 39 520 - -
Lal24g0635 533 Coils Coil 61 81 - -
Lal24g0635 533 Gene3D Transferase(Phosphotransferase) domain 1 205 435 - -
Lal24g0635 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Lal24g0635 533 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0635 533 ProSiteProfiles Protein kinase domain profile. 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0635 533 MobiDBLite consensus disorder prediction 17 47 - -
Lal24g0635 533 CDD STKc_NDR_like 117 482 - -
Lal24g0635 533 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lal24g0635 533 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lal24g0635 533 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 39 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0635 Lal-Chr24 4664421 4672550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0635 1 516 AGC Kinase Gene Family AT4G14350 81.044 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Lal24g0635 Pkinase 3.9e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0635 24 4664421 4672550 Lal24g0635 24 4664421 4672550 ECH
Lal12g0712 12 5392712 5400302 Lal24g0635 24 4664421 4672550 LSH
Lal13g0816 13 5484442 5490298 Lal24g0635 24 4664421 4672550 LSH