Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0633 ATGGGGCAATCACAATCCAAGGACGATTTGCTATTCCAGCAAGTCAATTATGGGAACATCGAAGGGATCAAAGCTCTTCATAGAGAAGGTGCAGGCCTTGAGTGGATGGACAGAGAAGGAAAAACACCCTTGATTGTTGCTTGTATGAATCCTGAGCTTTATAATGTTGCTAAAACTTTGATAGAGCTTGGAGCCAATGTTAATGCATACCGTCCAGGTCGTCATGCTGGGACTCCATTGCATCATGCAGCTAAAAGGGGCCTTCAACGTACCGTAAAGTTACTTCTTTTACATGGAGCCAATGCTCTTGTCTTGAATGATGATTGTCAAACTGCTCTTGAGGTTGCAAGGGCCAAAGGGCACACCAATGTTGTTCGTGCATTTGAGAGTCATTTATGCTTGTTCTCCGGTTGGCTGCGGGAGTTTCATGGACCTGGGTTCCTAGAAGTAGTAGCTCCTCAGTTGGTATCTAGAAAAGTGTGGGTATCATGTGATGTTTTTGAAGTATCTCGATTCATATCTGTGTTTGTGATTAATTTTCTTTGCAGTTGGGTAGTTGTTTTACCAGCTGGCTCCCGTAATCTTACCAGACCATACAAGTTGGAGCTTGCGATATATTCTTCTTTGCAGGACTCACAACCACGTACCATTATTGCTTTGTGGAAAGCAAACTTAGAAGAACCGAAGCTTCACCAGTCTGATGCGTCTGTGACAATTGTTGATACCACTCACAAAACACGCTTCAAACTTGGCCCTGCAAGTGAGAATGACAGGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCACAGGCAGATCCAGTATTTTTGCATAACAATGTGGCTACAGTTCCACCAACAGCACCGCCACCACCACCAGCTGCAGAAGACCCAGAGCTAGCTATGGCTATCCATGCATCCCTTCAGTATGGCATTAATGAGAGGCCACCCTTCCCTGATGCCTATCCAAACTTTGACGCAAGCTCTTCAAGTGGAGTGAATAATACAAGCAAGCATGGTTATCTAGGTACAGAAAATCCAAATGCCAACGAAAATGTGCCTGAGCATGAAGCTTCGCAAGGTGGCAATAATCAGCATGTCCAAATCCACAACAACGACAATATATCTGCTGGCCTTACTACTACCGACCTCGACTTCAATCCATCAGCACCTCCAGTAGACGGCCCCATTCAATATCCGTCAATTGATTCAAGCCCCATCGATATGTCATCTGAAGTCATTGAGAAGCTACCTAAAGAAGGAGAAAATGCTGATGGAAATAGTTCTACATGTGTGGTATGCTTAGATGCTCCCGCAGAAGGGGCATGTGTACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAATGAGGTCAAAACAAAAAAGTGGGGTTGCCCAGTATGTAGAGTTAAGATAGACCAGGTCATAAAGCTCTATCATGTTTGA 1455 0.4447 MGQSQSKDDLLFQQVNYGNIEGIKALHREGAGLEWMDREGKTPLIVACMNPELYNVAKTLIELGANVNAYRPGRHAGTPLHHAAKRGLQRTVKLLLLHGANALVLNDDCQTALEVARAKGHTNVVRAFESHLCLFSGWLREFHGPGFLEVVAPQLVSRKVWVSCDVFEVSRFISVFVINFLCSWVVVLPAGSRNLTRPYKLELAIYSSLQDSQPRTIIALWKANLEEPKLHQSDASVTIVDTTHKTRFKLGPASENDRQQLTWFSNACKGIPQADPVFLHNNVATVPPTAPPPPPAAEDPELAMAIHASLQYGINERPPFPDAYPNFDASSSSGVNNTSKHGYLGTENPNANENVPEHEASQGGNNQHVQIHNNDNISAGLTTTDLDFNPSAPPVDGPIQYPSIDSSPIDMSSEVIEKLPKEGENADGNSSTCVVCLDAPAEGACVPCGHVAGCMSCLNEVKTKKWGCPVCRVKIDQVIKLYHV 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0633 484 SMART ANK_2a 75 104 IPR002110 GO:0005515
Lal24g0633 484 SMART ANK_2a 39 69 IPR002110 GO:0005515
Lal24g0633 484 SMART ANK_2a 108 137 IPR002110 GO:0005515
Lal24g0633 484 SUPERFAMILY Ankyrin repeat 8 133 IPR036770 -
Lal24g0633 484 PANTHER ROLLING PEBBLES, ISOFORM B 173 484 - -
Lal24g0633 484 PANTHER ROLLING PEBBLES, ISOFORM B 1 162 - -
Lal24g0633 484 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Lal24g0633 484 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Lal24g0633 484 Pfam Zinc finger, C3HC4 type (RING finger) 431 478 - -
Lal24g0633 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 484 IPR013083 -
Lal24g0633 484 SUPERFAMILY RING/U-box 432 478 - -
Lal24g0633 484 SMART ring_2 433 471 IPR001841 -
Lal24g0633 484 MobiDBLite consensus disorder prediction 317 371 - -
Lal24g0633 484 Gene3D - 79 132 IPR036770 -
Lal24g0633 484 MobiDBLite consensus disorder prediction 326 371 - -
Lal24g0633 484 Gene3D - 2 78 IPR036770 -
Lal24g0633 484 ProSiteProfiles Zinc finger RING-type profile. 433 472 IPR001841 -
Lal24g0633 484 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Lal24g0633 484 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Lal24g0633 484 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Lal24g0633 484 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 173 484 - -
Lal24g0633 484 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0633 Lal-Chr24 4651190 4655171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0633 423 481 C3H Transcription Factor Family AT3G06140 28.814 3.42e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0633 - - lang:109354249 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0633 24 4651190 4655171 Lal24g0633 24 4651190 4655171 ECH
Lal12g0710 12 5351409 5356807 Lal24g0633 24 4651190 4655171 LSH