Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0631 ATGGTGAGAGCTCCTTGTTGTGAAAAAATGGGGTTGAAGAAAGGTCCTTGGACTTGTGAGGAAGATCAAATTCTCATTTCTTACATCCAAAAACATGGTCATAGCAATTGGCGTGCCCTACCAAAGCAAGCAGGATTGTTAAGGTGTGGGAAGAGTTGCAGATTGCGTTGGATTAACTATTTAAGGCCTGATATAAAGAGAGGAAATTTCACAAATGAAGAAGAAGAAACTATAATTAAGTTGCATGAGATATTAGGGAACAGGTGGTCAGCTATTGCAGCAAAATTACCCAGAAGAACTGATAATGAAATTAAAAATGTATGGCACTCACATTTGAAGAAGAGGTTATTGAAAACAGATAAACTCGTTTCAAAAAACAAAGTTAGACTTTCTAAGCCAAAGATCAAACGTTCGGATTCCAATTCGAGTACAATAACTCAATCAGACCCTGACACATCAACATGCACGACTTCTAGACACAACATCAAAATTGAAGAAATAGAGTCTCTAGACACAATGCCTGAAATTGATGAAAGTTTTTGGTCAGAAGAAGCTGCAATGGATGATGAAACCTACACCACAATGGTGCCATCAAAAAGTTTGACTAACTCAAATGAGTTATCACTTCAATGCTCATTTAATAATTATGAGGAAAGTTTCCAACAGAGTAATGGTTATATTTCAAACTTGGATGATGGCATGGATTTTTGGTATGACATATTCATCAAAAGTGGGGATTCAATAGAATTGCCACAGTTCTGA 762 0.3648 MVRAPCCEKMGLKKGPWTCEEDQILISYIQKHGHSNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEETIIKLHEILGNRWSAIAAKLPRRTDNEIKNVWHSHLKKRLLKTDKLVSKNKVRLSKPKIKRSDSNSSTITQSDPDTSTCTTSRHNIKIEEIESLDTMPEIDESFWSEEAAMDDETYTTMVPSKSLTNSNELSLQCSFNNYEESFQQSNGYISNLDDGMDFWYDIFIKSGDSIELPQF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0631 253 CDD SANT 69 112 IPR001005 -
Lal24g0631 253 Gene3D - 13 66 - -
Lal24g0631 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal24g0631 253 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Lal24g0631 253 MobiDBLite consensus disorder prediction 133 157 - -
Lal24g0631 253 CDD SANT 16 61 IPR001005 -
Lal24g0631 253 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal24g0631 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal24g0631 253 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 244 - -
Lal24g0631 253 MobiDBLite consensus disorder prediction 137 157 - -
Lal24g0631 253 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal24g0631 253 SMART sant 66 114 IPR001005 -
Lal24g0631 253 SMART sant 13 63 IPR001005 -
Lal24g0631 253 Pfam Myb-like DNA-binding domain 17 76 - -
Lal24g0631 253 Gene3D - 69 116 - -
Lal24g0631 253 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0631 Lal-Chr24 4637700 4643328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0631 1 241 MYB Transcription Factor Family AT2G31180 52.381 3.48e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal24g0631 Myb_DNA-bind_6 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0631 K09422 - gmx:100807569 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0631 24 4637700 4643328 Lal24g0631 24 4637700 4643328 ECH
Lal13g0813 13 5469334 5471879 Lal24g0631 24 4637700 4643328 LSH