Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0627 ATGACAACAACTTTGCTGGGAAAGGAGCATGGTTTGAACCTTAAGGAGACTGAGCTTTGCCTTGGTTTGCCTGGTGGTGGCTCTGAAGTGGAAACTCCAAGGGTCAATGGGAAGAGAGGATTCTCTGAGACTATTGATCTGAAGCTTAATCTTCCATCAAAGGAAGAACTGAATGAGAATCTGAAGAATGTTTCAAAGGAGAAGACCCTCCTTAAGGACCCTTCCAAGCCACCTGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGATCATATAGGAAGAACGTGATGACACAAAAGGTTAGCAATGAAGATTGCAGTGAGAAGATAGCTTCTGGGGCTTTTGTTAAGGTTTCCATGGATGGTGCACCTTACCTACGCAAGGTGGATTTGACAATGTACAAATGCTACCAAGAATTAGCTGATTCCTTAGCCAAAATGTTCAGCTCCTTCACCACAGGTGACTATGGGACCCAAGGAATGATAGAGTTCATGAATGAGAGCAAGTTGATGAATCTTCTGAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATTCTGATTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGGGTCATGCAAGCGTCTACGAATAATGAAAGGATCAGAAGCAATTGGACTTGCGCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGA 696 0.444 MTTTLLGKEHGLNLKETELCLGLPGGGSEVETPRVNGKRGFSETIDLKLNLPSKEELNENLKNVSKEKTLLKDPSKPPAKAQVVGWPPVRSYRKNVMTQKVSNEDCSEKIASGAFVKVSMDGAPYLRKVDLTMYKCYQELADSLAKMFSSFTTGDYGTQGMIEFMNESKLMNLLNSSEYVPTYEDKDSDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKSRS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0627 231 Gene3D - 108 225 - -
Lal24g0627 231 ProSiteProfiles PB1 domain profile. 113 213 IPR000270 GO:0005515
Lal24g0627 231 Pfam AUX/IAA family 35 222 IPR033389 -
Lal24g0627 231 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 224 IPR003311 GO:0005634|GO:0006355
Lal24g0627 231 SUPERFAMILY CAD & PB1 domains 110 212 - -
Lal24g0627 231 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 8 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0627 Lal-Chr24 4599132 4602584 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0627 98 225 B3 DNA Binding Superfamily AT1G19850 29.787 2.65e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal24g0627 AUX_IAA 1.4e-78 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0627 K14484 - gmx:547949 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0627 24 4599132 4602584 Lal24g0627 24 4599132 4602584 ECH
Lal24g0627 24 4599132 4602584 Lal12g0181 12 1262558 1265160 ECH
Lal12g0706 12 5313586 5316455 Lal24g0627 24 4599132 4602584 LSH
Lal13g0808 13 5434055 5436519 Lal24g0627 24 4599132 4602584 LSH