Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0626 ATGGAAAGCAAAATGGCATATGAAAATGATCTCAACCTTAAGGCAACAGAGCTTAGATTAGGGTTGCCAGGGACAGAAGAAAATGAAGAAAAAGCAAAATCTTGTGTTAGAACCAACAAAAGGTCATTGCCTGAAACATCTGAGGAGTGTGGTTCAAAGGGTTCTAATGCTCAACATATGAAAAGTGATGCAGCCCCTCCTTCCAAGGAAAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAAAACAACATGCAAGAAGCTGAGGGTGTTGGAATCTATGTGAAAGTAAGCATGGATGGAGCACCTTACCTTAGAAAGATAGATTTGAGGGTTTATGGAAGCTATCCACAACTTCTCAAAGCTCTAGAAAACATGTTCAAGTTAACCATAGGTGAATACTCTGAAAAAGAAGGTTATAAGGGATCTGATTTTGCACCTACATATGAAGACAAGGATGGTGACTTGATGCTAGTTGGAGATGTTCCATGGGATATGTTTGTGACTTCATGCAAAAGACTAAGAATCATGAAAGGATCAGAAGCTAGAGGTTTGGGTTGTGGTGTATGA 573 0.4014 MESKMAYENDLNLKATELRLGLPGTEENEEKAKSCVRTNKRSLPETSEECGSKGSNAQHMKSDAAPPSKEKIVGWPPIRSYRKNNMQEAEGVGIYVKVSMDGAPYLRKIDLRVYGSYPQLLKALENMFKLTIGEYSEKEGYKGSDFAPTYEDKDGDLMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCGV 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0626 190 ProSiteProfiles PB1 domain profile. 93 180 IPR000270 GO:0005515
Lal24g0626 190 MobiDBLite consensus disorder prediction 22 69 - -
Lal24g0626 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 187 IPR003311 GO:0005634|GO:0006355
Lal24g0626 190 SUPERFAMILY CAD & PB1 domains 84 179 - -
Lal24g0626 190 MobiDBLite consensus disorder prediction 23 47 - -
Lal24g0626 190 Pfam AUX/IAA family 16 187 IPR033389 -
Lal24g0626 190 PANTHER AUXIN-INDUCED PROTEIN 1 187 - -
Lal24g0626 190 Gene3D - 87 190 - -
Lal24g0626 190 MobiDBLite consensus disorder prediction 48 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0626 Lal-Chr24 4578218 4579818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0626 96 186 B3 DNA Binding Superfamily AT2G46530 38.462 1.24e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal24g0626 AUX_IAA 3.7e-51 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0626 K14484 - jre:109004346 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0626 24 4578218 4579818 Lal24g0626 24 4578218 4579818 ECH
Lal24g0626 24 4578218 4579818 Lal12g0182 12 1277332 1278630 ECH
Lal12g0705 12 5301882 5303525 Lal24g0626 24 4578218 4579818 LSH
Lal13g0807 13 5412479 5414242 Lal24g0626 24 4578218 4579818 LSH