Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0618 ATGGAGGGAAAGGAGAATTTTGCTGGTGCTGGTATTGGTCATGCAGTGGTAGGTGGTGAAGTTCCTGATAGCTTCCACGTGGCTCCTAGAATTGAGAACAACTTGGATTTTTCCATGGTCACGGTGCCAGCACCGTCGCCGGCAACGGAGGGTAAGAAGAAGAGGGGGAGACCTAGGAAGTATGGACCAGATGGTAAGATAGCAGCCATGGCTTTGTCTCCGATGCCGATTTCGTCATCGATTCCGTTGACCGGAGACTTCTCAGCTTGGAAAAGGGGGAGAGGGAGGCCTGTTGAATCTATCAAGAAGTCAACATATAAGTATGAAGTTGAAAGTCCAGGACAAGGTGGGGGAATTGCATACTCAGTTGGTGCCAATTTCACAGCTCATGTGCTTACAGTAAATGCTGGCGAGGATGTTACTATGAAGGTTATGTCCTTTTCTCATCAAGGATCACATGCTATATGCATTCTGTCTGCAAACGGCATGATTTCAAATGTTACACTTCGTCAACCGACTTCTTCAGGGGGTACTCTAACATATGAGGGACGGTTTGAGATTCTGTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAATTGCGAGAAGCAGATCCGGTGGGATGAGTGTCTCTTTGGCAGGTCCAGATGGTCGAGTTATGGGGGGTGGACTTGCTGGTTTGCTGATAGCTGCAGGTCCTGTGCAGGTTGTTGTGGGCAGTTTTCTTCCTGGTCACCATCTGGAGCATAAAAACAATCAGAGGAGGGTAGAGCATATATCAACTATTACCCCTTCACATGTCAATCCTATCTCTAATGATGAGGGAATAAAAGTTAGTTTTGGTGGATTTAAACCTATTATGACGCCTGCTGCTTTTCAAGAAGAGCATAATGCTTCATATAACAATGTTCAAGACTCAAGGAACTCATCTGCTGATGATAAATAA 948 0.4578 MEGKENFAGAGIGHAVVGGEVPDSFHVAPRIENNLDFSMVTVPAPSPATEGKKKRGRPRKYGPDGKIAAMALSPMPISSSIPLTGDFSAWKRGRGRPVESIKKSTYKYEVESPGQGGGIAYSVGANFTAHVLTVNAGEDVTMKVMSFSHQGSHAICILSANGMISNVTLRQPTSSGGTLTYEGRFEILSLSGSFMPTENGIARSRSGGMSVSLAGPDGRVMGGGLAGLLIAAGPVQVVVGSFLPGHHLEHKNNQRRVEHISTITPSHVNPISNDEGIKVSFGGFKPIMTPAAFQEEHNASYNNVQDSRNSSADDK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0618 315 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Lal24g0618 315 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 14 314 - -
Lal24g0618 315 SMART AT_hook_2 52 64 IPR017956 GO:0003677
Lal24g0618 315 SMART AT_hook_2 91 103 IPR017956 GO:0003677
Lal24g0618 315 MobiDBLite consensus disorder prediction 42 63 - -
Lal24g0618 315 Gene3D - 128 262 - -
Lal24g0618 315 CDD DUF296 130 242 IPR005175 -
Lal24g0618 315 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 14 314 IPR039605 GO:0003680
Lal24g0618 315 ProSiteProfiles PPC domain profile profile. 124 266 IPR005175 -
Lal24g0618 315 SUPERFAMILY AF0104/ALDC/Ptd012-like 126 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0618 Lal-Chr24 4499313 4504503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0618 37 255 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 62.281 3.02e-85 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0618 - - gmx:100789179 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0696 12 5197604 5203377 Lal24g0618 24 4499313 4504503 LSH
Lal13g0797 13 5288974 5294217 Lal24g0618 24 4499313 4504503 LSH
Lal9g0763 9 5350412 5356304 Lal24g0618 24 4499313 4504503 PCT
Lal24g0618 24 4499313 4504503 Lal9g0763 9 5350412 5356304 PCT