Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0615 ATGTCGAGGTCGCTGGTGCAGCCGATAGGGCAGAAGAGGCTAACGAATGTGGCTGTGGTGCGTCTCAAGAAGCATGGCATGCGATTTGAGATTGCCTGCTACCCAAACACTGTTCTTTCTTGGCGTTCTGGCGTGTTTAATGTGAAAATAGCATGTGCTTGCATGTTTGGTAACAGGGAGAAGGACATTGATGAAGTGTTGCAGTCACATACTGTTTATTCTAATGTTTCAAAAGGGGTTCTTGCTAAGTCAAAGGATTTAAATGCAGCTTTTGGGACTGATGACCAGTCCAAGATATGCTTAGAGATTTTAAAGAAAGGGGAGCTTCAGGTTGCTGGTAAAGAGAGGGAGTCTATCCTGTCGAGTCAGTTCCGGGATATTGCTACCATTGTGATGCAGAAGACCTACAATCCTGAGACTCAGCGCCCTTACACTATCAGTATGATCGAACGCCTCATGAGGGAAATTCATTTTGCTGTTGACCCAAATAGCACATCCAAGAAGCAGGCTCTGGAGTTGATTCAAGAGCTTCAAAAGCTTTTCCCAATAAAACGGTGTCCATTAAGGATACGAGTTGCTGCTCCTGAGGAGGAAGTTGCTCCCCTTTTAGTGAAGCTGAATGAATGGAAGGCAAACATTGTTTCCAAAGAAGGATCTGCTGGTCAACTATCTGTTGTTTTTGAATTGGAACCTGGTCTATATAAGGATTGTCATGACTTTGTTATGAATAACATGCATGGAAGATTTGAAGTTCTTGCACACTCTCTTTATGTTGATGGGGATACCCAAGTGGAGCAATACAATGATTATGAGGATATGCCTGCTCCTCTGCCCAAAGAAACTCGCGAATCTGTGCTTGAACTGAATGATAAACTTCAAAAGCAGTCAATTTCATCTACAAGTAGGCCTACTGAGGGACAACAACAAAAGCAAAACAAGTGCAACACATGCAATGTTTCTTTCGAAGACGCAAAACTGTACAGGGAACACCACAAAAGTGAGTGGCACAAGCACAATATGAAGCGGAAGACAAGGCAACTCCCACCCCTTACTGAGGAAGAGTGCATGGCAGACATGGAATTAGGTGACTCAAAATCTGATTTGAAGGATTATTCATTTTGA 1122 0.4323 MSRSLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVFNVKIACACMFGNREKDIDEVLQSHTVYSNVSKGVLAKSKDLNAAFGTDDQSKICLEILKKGELQVAGKERESILSSQFRDIATIVMQKTYNPETQRPYTISMIERLMREIHFAVDPNSTSKKQALELIQELQKLFPIKRCPLRIRVAAPEEEVAPLLVKLNEWKANIVSKEGSAGQLSVVFELEPGLYKDCHDFVMNNMHGRFEVLAHSLYVDGDTQVEQYNDYEDMPAPLPKETRESVLELNDKLQKQSISSTSRPTEGQQQKQNKCNTCNVSFEDAKLYREHHKSEWHKHNMKRKTRQLPPLTEEECMADMELGDSKSDLKDYSF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0615 373 Gene3D - 114 186 IPR037188 -
Lal24g0615 373 MobiDBLite consensus disorder prediction 292 312 - -
Lal24g0615 373 Pfam SBDS protein, C-terminal domain 189 252 IPR046928 -
Lal24g0615 373 Gene3D - 188 265 - -
Lal24g0615 373 SUPERFAMILY beta-beta-alpha zinc fingers 301 343 IPR036236 -
Lal24g0615 373 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 373 IPR039100 -
Lal24g0615 373 Gene3D Classic Zinc Finger 303 362 - -
Lal24g0615 373 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 116 IPR019783 -
Lal24g0615 373 MobiDBLite consensus disorder prediction 333 373 - -
Lal24g0615 373 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 242 IPR002140 GO:0042256
Lal24g0615 373 ProSitePatterns Zinc finger C2H2 type domain signature. 314 336 IPR013087 -
Lal24g0615 373 ProSitePatterns Uncharacterized protein family UPF0023 signature. 60 79 IPR018023 -
Lal24g0615 373 Gene3D - 1 110 IPR036786 -
Lal24g0615 373 SUPERFAMILY Hypothetical protein AF0491, middle domain 112 185 IPR037188 -
Lal24g0615 373 PANTHER BNAANNG06530D PROTEIN 1 373 - -
Lal24g0615 373 Pfam SBDS protein, domain II 125 185 IPR018978 GO:0042254
Lal24g0615 373 SUPERFAMILY FYSH domain 13 110 IPR036786 -
Lal24g0615 373 MobiDBLite consensus disorder prediction 358 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0615 Lal-Chr24 4483842 4486601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0615 52 373 C2H2 Transcription Factor Family AT1G43860 59.880 5.99e-142 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal24g0615 SBDS_C 3.7e-27 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0615 K14574 - gmx:100797497 635.18