Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0612 ATGGACTTTGATCCAAGCTTCTTAGACAAATTATATGACCTTCCTGGGGTTTTCTCTGAACATACTAGAACTTCAAAGATACCCATCATGGTTCCATTACAGCAAAATTCTACTCTTCTACCACCTCCACCAAATAACATCTTCTTATACAACCATGACAATTCCAACAATTTCCAACATCATCATCATCATTCCTTCAATATGATCCAAACCAATTCTTCAACTACTGATTCATATGCCAATTGGTCTCACAGAAATCTTGTCAACTCCTACTACTCCACTGAATTTGCACCAAATAATAACAAAATGGAAGGCATGCATGGATACTTTAACACATGCAAGGGGTTATGGGATTTTCCCCGGGAAACTCCTATTCAGCATGGTGCAATTTCACAACCTAGGGTGGGTCCTTCTCTTCCACCACCACCACCACCACCACATGTCTATGAATCAATGCTAGTAAATTATAGGCCTCAAGACAAGCTTGCACACATTACTGGAGCTGGGAATGGTCATCAGAAAACTGATCAGAATATTGTTATTGGTGATGACAAGGGGAAAAGGAAGATGGGACATGGAAACAATGTTCAAATTGTGCATAAGATCACCAACACAATCAAAGGCCACTGGACTCCACATGAGGACATGGTTCTCATGGAATCAGTGAGACGTTATGGGATTAAAAAGTGGTCTTACATCGCCCAATTACTAAATGGAAGGGTCGCAAAACAATGCAGAGAAAGATGGCTCAACCATTTACGGCCGAACATTAGGAAGGACTCATGGAGTGAAGAAGAGGATAAAATACTTATTGAAGCTCATAAGGATATTGGAAACAAATGGGCAAAAATTGCAAAAAGATTATCTGGAAGAACTGAGAACACTGTCAAGAACCATTGGAATGCTACTAAACGACGCTTAAACGCGAAGAGACGAGTGAATAAGCGCATCGATCCAAAGGGAGAACTTCTTTTGAACTACATCAAACAAGTTACTACAGAAACCATAGCTAAAAAAGAATTGAAGAAACCCATCACTAATATCAACTTAAGGAGTGATAATCACAATGATCTCAACCTCCACCCAGTTTCGTATGAGAATAATGTAGCTGATCTTAAATTGCATTATGCTCCTGCCATCAATGAAAATGATTGTTATGTTCCAGTGATGGAAGATATATAG 1182 0.3926 MDFDPSFLDKLYDLPGVFSEHTRTSKIPIMVPLQQNSTLLPPPPNNIFLYNHDNSNNFQHHHHHSFNMIQTNSSTTDSYANWSHRNLVNSYYSTEFAPNNNKMEGMHGYFNTCKGLWDFPRETPIQHGAISQPRVGPSLPPPPPPPHVYESMLVNYRPQDKLAHITGAGNGHQKTDQNIVIGDDKGKRKMGHGNNVQIVHKITNTIKGHWTPHEDMVLMESVRRYGIKKWSYIAQLLNGRVAKQCRERWLNHLRPNIRKDSWSEEEDKILIEAHKDIGNKWAKIAKRLSGRTENTVKNHWNATKRRLNAKRRVNKRIDPKGELLLNYIKQVTTETIAKKELKKPITNINLRSDNHNDLNLHPVSYENNVADLKLHYAPAINENDCYVPVMEDI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0612 393 PANTHER MYB DOMAIN PROTEIN 100-RELATED 103 343 - -
Lal24g0612 393 CDD SANT 210 253 IPR001005 -
Lal24g0612 393 SUPERFAMILY Homeodomain-like 205 300 IPR009057 -
Lal24g0612 393 SMART sant 258 306 IPR001005 -
Lal24g0612 393 SMART sant 206 255 IPR001005 -
Lal24g0612 393 Gene3D - 206 258 - -
Lal24g0612 393 ProSiteProfiles Myb-like domain profile. 207 253 IPR001005 -
Lal24g0612 393 PANTHER MYB PROTEIN-RELATED 103 343 - -
Lal24g0612 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 253 IPR017930 -
Lal24g0612 393 ProSiteProfiles Myb-like domain profile. 254 304 IPR001005 -
Lal24g0612 393 Gene3D - 260 322 - -
Lal24g0612 393 CDD SANT 261 304 IPR001005 -
Lal24g0612 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 254 308 IPR017930 -
Lal24g0612 393 Pfam Myb-like DNA-binding domain 210 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0612 Lal-Chr24 4465378 4467501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0612 201 331 MYB Transcription Factor Family AT4G18770 61.069 1.27e-52 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal24g0612 Myb_DNA-bind_6 7.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0612 K09422 - lang:109354158 659.833