Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0605 ATGGCAACTAGACTTCAATTTGAGAATTCATGTGAAGTTGGAGTGTTTTCTAAACTCACCAATGCCTATTGTTTAGTTGCTATTGGAGGTTCTGAAAACTTCTACAGTACATTTGAGGCTGAGTTAGCAGATGTTATCCCTATCATTAAAACCTCCATTGGTGGCACTCGTATCATCGGTCGTCTTTGTGTTGGAAACAAGAATGGGCTTCTCTTGCCCCATACCACCACAGACCAAGAAAGGCATGTTAGCATGTGGTTCTCTATGTTAATGATTGATGGTTCATCTGTCGTAGAGAGTGAGTTTGGCGTAACGGTAAGGTTGTTAATTAGTGACATTGAGGTCATAGGTTCAAATCCTATAAACACCCTCTTCGCTTGTAGGCGTAAGGTTGTGTACATCAACCCTCCCCAGAATCCACTAGAACTCTGGAGCATTTGTGTTTTCATATCGACTTATGCTACTTCATTGTTTTGCCATGACATTTCTGCAGAACTTCAACACTTGAGAAACAGTCTGCCTGATCAAGTTGTTGTTCAGCGCATAGATGAAAGATTATCTGCTCTGGGAAATTGTATAGCATGCAATGACCATGTGGCCCTCACGCACACTGATCTTGACAGGGAAACTGAGGAAATGATTGCAGATGTTCTTGGGGTAGAAGTTTTCAGGCAGACGATTGCCGGTAATATACTTGTTGGCAGTTACTGTGCATTCTCCAACAGAGGTGGTTTGGTTCACCCTCATACTTCAATAGAAGACTTGGATGAACTTTCTACACTTCTTCAAGTTCCTTTGGTGGCGGGGACCGTCAATCGTGGAAGCGAAGTTATAGCTGCTGGCATGACAGTGAATGATTGGACAGCCTTTTGTGGTTCAGACACCACAGCAACAGAGCTCTCTGTGATTGAGAGTGTTTTCAAGCTGAGGGAAGCTCAACCTAGTGCCATTGTGGATGAGATGAGAAAATCACTCATTGATAGCTATGTTTAA 993 0.429 MATRLQFENSCEVGVFSKLTNAYCLVAIGGSENFYSTFEAELADVIPIIKTSIGGTRIIGRLCVGNKNGLLLPHTTTDQERHVSMWFSMLMIDGSSVVESEFGVTVRLLISDIEVIGSNPINTLFACRRKVVYINPPQNPLELWSICVFISTYATSLFCHDISAELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDSYV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0605 330 TIGRFAM eIF-6: putative translation initiation factor eIF-6 165 309 IPR002769 GO:0042256|GO:0043022
Lal24g0605 330 CDD IF6 2 308 IPR002769 GO:0042256|GO:0043022
Lal24g0605 330 SUPERFAMILY Pentein 1 83 - -
Lal24g0605 330 SMART eIF6neu2 3 289 IPR002769 GO:0042256|GO:0043022
Lal24g0605 330 Gene3D - 148 310 - -
Lal24g0605 330 Gene3D - 1 85 - -
Lal24g0605 330 Hamap Translation initiation factor 6 [eif6]. 1 330 IPR002769 GO:0042256|GO:0043022
Lal24g0605 330 Pfam eIF-6 family 163 288 IPR002769 GO:0042256|GO:0043022
Lal24g0605 330 Pfam eIF-6 family 4 81 IPR002769 GO:0042256|GO:0043022
Lal24g0605 330 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 163 330 - -
Lal24g0605 330 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 81 - -
Lal24g0605 330 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 163 330 IPR002769 GO:0042256|GO:0043022
Lal24g0605 330 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 81 IPR002769 GO:0042256|GO:0043022
Lal24g0605 330 SUPERFAMILY Pentein 163 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0605 Lal-Chr24 4414603 4417904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0605 1 80 Eukaryotic Initiation Factors Gene Family AT3G55620 92.500 1.66e-48 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0605 K03264 - gmx:100800352 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0782 13 5182081 5185046 Lal24g0605 24 4414603 4417904 LSH