Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0589 ATGTCAAACACACACTTTGTTGAAAATTTTAAGGATAGAAAATTCAAGCCAAAGATTATGGAATCATCCATCATCGAAAAAGATTTAGAATTGTCACTTTCTCTGAGTCTTGGTGGCAACTACACAATACATAAACCATCATCCAAACCCACATTCAAATCCTTGAAGGCTAGCAATAATAGTTCATGTTTTGATCCAAAACTTATCGAAAGCTCCAATGACAATGAAATTGTCAAGGAGAAACAATTCTCATGCAAGTTTTGTGAAAAGAAGTTTCACAATCCTCAAGCTCTGGGAGGACACCAAAACACTCATAGGCGTGAAAGGATCCTTTCGAGGATTAACAAAGAATTTTCTCTGAGTACTTTCGGACTCGGTGTTCACCCATATCTTTACTCATCCATCGGAAATCGTAATCTCCAAGGTTTACCACTTAACCACAAGGGTCACATGCACCCTATGGGTCATATGTCTCGTATGCCAAGCCACAATTTTGAACTTGGCTATGGCAATAAAGGATTTTACAACACATCCTTCTCCAATAACCATTTTGGAATGAGGTCTAACTCATGGGGTATAAGTCATGAAACTCCTCAAAGATTGAATCATATGGGTGTGGGATTTAGTTGTGAGTATGATCAAGTTCCTTCACGTGCAGGAAATGTAGTTAATAGATCTAATACTATCCATGGTGATCATTGA 702 0.3789 MSNTHFVENFKDRKFKPKIMESSIIEKDLELSLSLSLGGNYTIHKPSSKPTFKSLKASNNSSCFDPKLIESSNDNEIVKEKQFSCKFCEKKFHNPQALGGHQNTHRRERILSRINKEFSLSTFGLGVHPYLYSSIGNRNLQGLPLNHKGHMHPMGHMSRMPSHNFELGYGNKGFYNTSFSNNHFGMRSNSWGISHETPQRLNHMGVGFSCEYDQVPSRAGNVVNRSNTIHGDH 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0589 233 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Lal24g0589 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Lal24g0589 233 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 218 - -
Lal24g0589 233 Gene3D Classic Zinc Finger 58 121 - -
Lal24g0589 233 PANTHER ZINC FINGER PROTEIN JAGGED 1 218 IPR045320 GO:0003700
Lal24g0589 233 SUPERFAMILY beta-beta-alpha zinc fingers 79 110 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0589 Lal-Chr24 4225040 4225741 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0589 63 135 C2H2 Transcription Factor Family AT5G25160 36.986 7.81e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal24g0589 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0589 - - gmx:102663144 180.259