Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal24g0589 | ATGTCAAACACACACTTTGTTGAAAATTTTAAGGATAGAAAATTCAAGCCAAAGATTATGGAATCATCCATCATCGAAAAAGATTTAGAATTGTCACTTTCTCTGAGTCTTGGTGGCAACTACACAATACATAAACCATCATCCAAACCCACATTCAAATCCTTGAAGGCTAGCAATAATAGTTCATGTTTTGATCCAAAACTTATCGAAAGCTCCAATGACAATGAAATTGTCAAGGAGAAACAATTCTCATGCAAGTTTTGTGAAAAGAAGTTTCACAATCCTCAAGCTCTGGGAGGACACCAAAACACTCATAGGCGTGAAAGGATCCTTTCGAGGATTAACAAAGAATTTTCTCTGAGTACTTTCGGACTCGGTGTTCACCCATATCTTTACTCATCCATCGGAAATCGTAATCTCCAAGGTTTACCACTTAACCACAAGGGTCACATGCACCCTATGGGTCATATGTCTCGTATGCCAAGCCACAATTTTGAACTTGGCTATGGCAATAAAGGATTTTACAACACATCCTTCTCCAATAACCATTTTGGAATGAGGTCTAACTCATGGGGTATAAGTCATGAAACTCCTCAAAGATTGAATCATATGGGTGTGGGATTTAGTTGTGAGTATGATCAAGTTCCTTCACGTGCAGGAAATGTAGTTAATAGATCTAATACTATCCATGGTGATCATTGA | 702 | 0.3789 | MSNTHFVENFKDRKFKPKIMESSIIEKDLELSLSLSLGGNYTIHKPSSKPTFKSLKASNNSSCFDPKLIESSNDNEIVKEKQFSCKFCEKKFHNPQALGGHQNTHRRERILSRINKEFSLSTFGLGVHPYLYSSIGNRNLQGLPLNHKGHMHPMGHMSRMPSHNFELGYGNKGFYNTSFSNNHFGMRSNSWGISHETPQRLNHMGVGFSCEYDQVPSRAGNVVNRSNTIHGDH | 233 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal24g0589 | 233 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 85 | 105 | IPR013087 | - | |
Lal24g0589 | 233 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 83 | 110 | IPR013087 | - | |
Lal24g0589 | 233 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 1 | 218 | - | - | |
Lal24g0589 | 233 | Gene3D | Classic Zinc Finger | 58 | 121 | - | - | |
Lal24g0589 | 233 | PANTHER | ZINC FINGER PROTEIN JAGGED | 1 | 218 | IPR045320 | GO:0003700 | |
Lal24g0589 | 233 | SUPERFAMILY | beta-beta-alpha zinc fingers | 79 | 110 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal24g0589 | Lal-Chr24 | 4225040 | 4225741 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal24g0589 | 63 | 135 | C2H2 Transcription Factor Family | AT5G25160 | 36.986 | 7.81e-12 | 61.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lal24g0589 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal24g0589 | - | - | gmx:102663144 | 180.259 |