Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0580 ATGGGTTCTATGAACTGGTTAGGGTTTTCTCTTGCCCCTCATGATGAAGATCATAACTCTCACTCACAAATGGTGGCACCAATTAGCTTCAACCCTTATGGCAGCACTGATATCTCTCCTTCTTTTCCCATATTTGAAGGACTCAACACACATAACACTCATCACACTTCTCAAGATTGGAACACAAAGGGTTTGGGAAGTAACTCATCAGAGGATAACTACTGCAGCAACAACAACAACAACAACAACAACAACAACAGCAAAAACTTGCTATTAGAAACATCATGCAACCAACAACAACATCCTAAGCTAGAAAACTTTCTCGGCCAACACTCTTTTGGTGATAATAACCATCCAATATATGGTGGTGATACTAATAACAAAGCCTCATCCAGTGACATAATGTTTCCAAACTGTTCATTACAACTTCCATTGGCCGGTGGCGGAGAAGGTGGTGACGGTGGTGGTAGTCCAAGAAACAATACTTCTATAGGGTTGTCTATGATAAAGTCTTGGTTAAGAAACCAATCACAGCAATCAGATTCAACAAATGTGAATAGTAGTACTGTTTCACAGTCAAGTTCTTCTGTAGTACTGTCTCTCCTTGCAGCGAATGTTGATAATGGAGAGAGTTCATCTTTGGAGAATAATGAGCATAACCCCAAGACTTCTTCTGCAGTGGTTGATAACCAAGGTGGTGGTGATGCTATTGTTGAGGGTGTAGTGCCCAGAAAATCTAGTGACACTTTTGGACAAAGAACTTCTATATACCGTGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAGGCTCATTTGTGGGACAATAGTTGTAGAAGAGAAGGACAAACTCGAAAAGGAAGACAAGGAGGTTATGACAAAGAAGAAAAAGCTGCTAGATCATACGATTTAGCCGCACTGAAGTATTGGGGAGCAACTACAACAACAAATTTTCCAACTAGCAACTATGAAAAAGAGTTAGAAGAAATGAAGCACATGACAAGGCAGGAGTACGTTGCCTCACTGAGAAGGAAGAGTAGTGGTTTTTCTCGTGGTGCATCCATTTATCGAGGAGTAACTAGGCATCACCAACATGGTAGGTGGCAAGCCAGAATTGGGAGAGTTGCGGGCAATAAAGATCTCTACTTGGGAACTTTCGGGACTCAAGAAGAAGCTGCTGAAGCATATGACATAGCAGCAATCAAATTCAGAGGATTGAATGCAGTTACAAACTTTGACATGACCAGATATGATGTTAAGAGCATTCTTGAAAGCACCACTCTACCCATTGGTGCTGCTGCAAAACGCAATCTGAAGGATAATAATAGTGTTGATCTCACTGTTACTACTCTTCATCATAATAATATTAGGGCATCACCATCAATGCAAAATAATAGCATAACCTCTCATCTAGGTTATGGTGCTACAACAACAACCTTGTACCATGATTGGACTTCTTCTATTCCATTTCAACAACCTCATCCTTATAGCCAGATCCGAAGTAATTACTCTACTTATGGACATAACAACTCACATAAGCTTTGGTGCAAGCAAGAACAAGATTCTGAAGATCATGCCTCACATCAAACTTTTCATGATATTCAACACCAACTTCAGTTAGGGTATAATAATAACAGTACCCATAATTTCTTTCATTCTGATTCTGGGTTGAATGGTGGTATTATGAGTATTGGTTCATCTTCTATGGATAATAATAGCTCTAGCTCTAGCTCAGTCATTTATGATGGTAATGGTTATGGAAATGGTGGAAGCTACATGATTCCTATGGCTAACCCTACTTACAATATTGGTGTTGATGGTAACCAAAGTCAAAGAACCAGTAATGGTTATGGTTTTGAGAATTGTTATAGTACAAGTGATCCTTATCATGCAAGGAACTTGTATTATCAGCAAACATCTTCTGATGCATGCAATAATACTTGGGTGCCAACTTCAGTTTCAAGTCTTGCACCAAGGACTAACAATTTGGCTCTTTCACAAGGTGCTCAACCATTCACATTATTGCATGAATAG 2034 0.3963 MGSMNWLGFSLAPHDEDHNSHSQMVAPISFNPYGSTDISPSFPIFEGLNTHNTHHTSQDWNTKGLGSNSSEDNYCSNNNNNNNNNNSKNLLLETSCNQQQHPKLENFLGQHSFGDNNHPIYGGDTNNKASSSDIMFPNCSLQLPLAGGGEGGDGGGSPRNNTSIGLSMIKSWLRNQSQQSDSTNVNSSTVSQSSSSVVLSLLAANVDNGESSSLENNEHNPKTSSAVVDNQGGGDAIVEGVVPRKSSDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARSYDLAALKYWGATTTTNFPTSNYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVKSILESTTLPIGAAAKRNLKDNNSVDLTVTTLHHNNIRASPSMQNNSITSHLGYGATTTTLYHDWTSSIPFQQPHPYSQIRSNYSTYGHNNSHKLWCKQEQDSEDHASHQTFHDIQHQLQLGYNNNSTHNFFHSDSGLNGGIMSIGSSSMDNNSSSSSSVIYDGNGYGNGGSYMIPMANPTYNIGVDGNQSQRTSNGYGFENCYSTSDPYHARNLYYQQTSSDACNNTWVPTSVSSLAPRTNNLALSQGAQPFTLLHE 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0580 677 MobiDBLite consensus disorder prediction 209 230 - -
Lal24g0580 677 Gene3D AP2/ERF domain 256 321 IPR036955 GO:0003700|GO:0006355
Lal24g0580 677 Gene3D AP2/ERF domain 355 415 IPR036955 GO:0003700|GO:0006355
Lal24g0580 677 SUPERFAMILY DNA-binding domain 354 414 IPR016177 GO:0003677
Lal24g0580 677 PANTHER BNAC02G44180D PROTEIN 5 607 - -
Lal24g0580 677 CDD AP2 354 413 IPR001471 GO:0003700|GO:0006355
Lal24g0580 677 Pfam AP2 domain 355 405 IPR001471 GO:0003700|GO:0006355
Lal24g0580 677 Pfam AP2 domain 256 311 IPR001471 GO:0003700|GO:0006355
Lal24g0580 677 MobiDBLite consensus disorder prediction 54 89 - -
Lal24g0580 677 ProSiteProfiles AP2/ERF domain profile. 256 319 IPR001471 GO:0003700|GO:0006355
Lal24g0580 677 SMART rav1_2 355 419 IPR001471 GO:0003700|GO:0006355
Lal24g0580 677 SMART rav1_2 256 325 IPR001471 GO:0003700|GO:0006355
Lal24g0580 677 MobiDBLite consensus disorder prediction 209 236 - -
Lal24g0580 677 ProSiteProfiles AP2/ERF domain profile. 355 413 IPR001471 GO:0003700|GO:0006355
Lal24g0580 677 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 607 - -
Lal24g0580 677 SUPERFAMILY DNA-binding domain 255 321 IPR016177 GO:0003677
Lal24g0580 677 PRINTS Ethylene responsive element binding protein signature 257 268 IPR001471 GO:0003700|GO:0006355
Lal24g0580 677 PRINTS Ethylene responsive element binding protein signature 395 415 IPR001471 GO:0003700|GO:0006355
Lal24g0580 677 CDD AP2 255 321 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0580 Lal-Chr24 4114433 4119691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0580 232 445 AP2-EREBP Transcription Factor Family AT3G20840 81.106 3.01e-127 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal24g0580 AP2 2.5e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0580 K09285 - gmx:100797584 625.165