Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0578 ATGAACACGACGATAGCAGAGGATGAAAACGACGCCGTTCTAGTTGCACCAACAAATTTTTCAATGGTAGAAGATTGCATTTATCGCTCCAGTTTCCCTCAACCTTGCAATTTCCCCTTTCTTCAAACCCTAAATCTTCGATCCATCATTTACTTGTGCCCTGAACCCTATCCGCAACAGAATTTGGATTTTCTTCAGTCACACAATATTCAACTCTTTCAATTTGGAATTGAGGGCAAAACGGATCTTTCTGTATCTACGGGCAATGATACTATAATGAAGGCTCTCAAAGTTTTAATTGATGTGAGAAATCACCCAGTTTTGATTCACTGCAATCGAGGAAAGCATAGAACTGGTTGCATTGTTGGTTGCTTGAGAAAATTTCAGAATTGGTGTTTGACTTGTGTGCTTGAAGAATATCAGCAATTTGCTGGTCCTAAATCCAGAACCACAGATTTGAAATTCATAGAAACTTTTGATACCATAAGCTTGAGGCAGTGTCTTTACAGCATCATCTATAAATACCAAGGATATGCTTCCATGAAGCCACGCTTGATGTATAAAGATGACAATTTACAAAAGCCTCAATTGGCATCAGCATAG 603 0.3864 MNTTIAEDENDAVLVAPTNFSMVEDCIYRSSFPQPCNFPFLQTLNLRSIIYLCPEPYPQQNLDFLQSHNIQLFQFGIEGKTDLSVSTGNDTIMKALKVLIDVRNHPVLIHCNRGKHRTGCIVGCLRKFQNWCLTCVLEEYQQFAGPKSRTTDLKFIETFDTISLRQCLYSIIYKYQGYASMKPRLMYKDDNLQKPQLASA 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0578 200 Pfam Tyrosine phosphatase family 14 162 IPR004861 -
Lal24g0578 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 9 182 - -
Lal24g0578 200 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791
Lal24g0578 200 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791
Lal24g0578 200 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791
Lal24g0578 200 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791
Lal24g0578 200 Gene3D Protein tyrosine phosphatase superfamily 13 163 IPR029021 -
Lal24g0578 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE 9 182 - -
Lal24g0578 200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 160 IPR029021 -
Lal24g0578 200 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 168 IPR020422 GO:0006470|GO:0008138
Lal24g0578 200 CDD PFA-DSP_Siw14 14 160 - -
Lal24g0578 200 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0578 Lal-Chr24 4103820 4105668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0578 6 200 Protein tyrosine phosphatase (PTP) family AT3G02800 64.103 1.39e-95 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0578 K18045 - qsu:112008997 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0754 13 4924316 4927031 Lal24g0578 24 4103820 4105668 LSH