Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0577 ATGATATTACACTTGTATTACTTCATTCACCCACTTGTAGGTTTAGATTACGCGTCTTTCAAAAACTTGACTTATTCATATCATCCTATTTCAGATGCACTGTGGCAAATGAAATTGACATCTAGTGAAACAATGGAAGCTGGAACTTATCCACAGCGTCCTGGAGAGCCAGATTGTTCATATTACATCAGAACAGGTCTTTGTAGATTTGGAGCAACATGTCGATTTAATCACCCTCCTAACAGGAAGCTGTACTATATGAAGACTGGAACTTGCAAATTTGGAGCTACATGCAAGTTTCATCATCCTAGAGACCAGGCTGGAATGTCTGGAAGAATTGCCTTAAATATTTTAGGCTATCCGCTTCGCCCTAATGAGCCTGAATGCACCTACTATTTAAGAACAGGACAGTGTAAATTCGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGATGCTTTCATTAAGGGATTCTCCCGTTTATCCTACTGTCCAATCTCCAACTACACCAGGTCCACAGCCATATGCTGGAGGAATTGCAAATTGGTCAAGAACATCTTATATTGCTAGTCCACGCTGGCAAGGCCCTTCAAGTTACACACCTTTAATTCTACCTCAAGGAGTTGTTTCAGTGCCTGGTTGGAGTGCATACAGTGGTCAAATGGGATCAATCCCTACTTCAGATAGTCCACAGCAAACAATAGGAAATGGTCAAACATATGGAACTTCTCACCAAGATGAAGTAGCAAATGCAGGAACACATGGGGCATATTCTCAATTCCGTTCTGGATCTGTTCCTGTAGGGTTTTATGCGTTGCAGGGGGAGAACATATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAATTCTACATGAAGACTGGAGATTGTAAGTTCGGAGCAGTCTGTCGGTTCCACCATCCACGTGAGAGGCTGGTTCCTGTTCCTGACTGCGTCTTGAGTCCAATTGGCCTTCCTTTACGTCCTGGAGAGCCATTGTGTGTCTTCTATTCGCGTTACGGCATATGCAAATTTGGACCAAGTTGCAAGTTTGACCACCCAATGGGAATCTTCACCTATAATTTATCTGCACCGCCTTCCACCGAGGCCTCAGGCCGGCGTCTGTTAGGTTCTTCATCAGGAACAGCTGCATTAAATTTATCATCAGAAGGACTTGCTGAGTCAAGCTCAGCAAAGCCCAGGAGGCTTTCAATATCAGAGACAAGACAGGTTCCTTCTGATGATGATGACATTGATGATGAGGGGTGA 1275 0.4392 MILHLYYFIHPLVGLDYASFKNLTYSYHPISDALWQMKLTSSETMEAGTYPQRPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLYYMKTGTCKFGATCKFHHPRDQAGMSGRIALNILGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRDSPVYPTVQSPTTPGPQPYAGGIANWSRTSYIASPRWQGPSSYTPLILPQGVVSVPGWSAYSGQMGSIPTSDSPQQTIGNGQTYGTSHQDEVANAGTHGAYSQFRSGSVPVGFYALQGENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLVPVPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNLSAPPSTEASGRRLLGSSSGTAALNLSSEGLAESSSAKPRRLSISETRQVPSDDDDIDDEG 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0577 424 PANTHER PROTEIN PHOSPHATASE RELATED 85 423 - -
Lal24g0577 424 PANTHER PROTEIN PHOSPHATASE RELATED 30 84 - -
Lal24g0577 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 126 150 IPR000571 GO:0046872
Lal24g0577 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 104 IPR000571 GO:0046872
Lal24g0577 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 80 IPR000571 GO:0046872
Lal24g0577 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 332 357 IPR000571 GO:0046872
Lal24g0577 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 286 311 IPR000571 GO:0046872
Lal24g0577 424 SUPERFAMILY CCCH zinc finger 57 81 IPR036855 GO:0046872
Lal24g0577 424 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Lal24g0577 424 SUPERFAMILY CCCH zinc finger 333 357 IPR036855 GO:0046872
Lal24g0577 424 MobiDBLite consensus disorder prediction 389 424 - -
Lal24g0577 424 ProSiteProfiles Zinc finger C3H1-type profile. 85 105 IPR000571 GO:0046872
Lal24g0577 424 SUPERFAMILY CCCH zinc finger 126 151 IPR036855 GO:0046872
Lal24g0577 424 MobiDBLite consensus disorder prediction 389 409 - -
Lal24g0577 424 SUPERFAMILY CCCH zinc finger 288 314 IPR036855 GO:0046872
Lal24g0577 424 Gene3D - 282 362 - -
Lal24g0577 424 Gene3D - 85 160 - -
Lal24g0577 424 Gene3D - 21 84 - -
Lal24g0577 424 ProSiteProfiles Zinc finger C3H1-type profile. 284 312 IPR000571 GO:0046872
Lal24g0577 424 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 30 84 - -
Lal24g0577 424 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 85 423 - -
Lal24g0577 424 ProSiteProfiles Zinc finger C3H1-type profile. 330 358 IPR000571 GO:0046872
Lal24g0577 424 ProSiteProfiles Zinc finger C3H1-type profile. 123 151 IPR000571 GO:0046872
Lal24g0577 424 SMART c3hfinal6 330 357 IPR000571 GO:0046872
Lal24g0577 424 SMART c3hfinal6 53 80 IPR000571 GO:0046872
Lal24g0577 424 SMART c3hfinal6 284 311 IPR000571 GO:0046872
Lal24g0577 424 SMART c3hfinal6 81 104 IPR000571 GO:0046872
Lal24g0577 424 SMART c3hfinal6 123 150 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0577 Lal-Chr24 4090584 4097655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0577 34 422 C2H2 Transcription Factor Family AT3G02830 55.714 1.07e-156 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal24g0577 zf-CCCH 5.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0577 - - lang:109354276 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0577 24 4090584 4097655 Lal24g0577 24 4090584 4097655 ECH
Lal13g0753 13 4912738 4921083 Lal24g0577 24 4090584 4097655 LSH