Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0563 ATGGCGCACCGGTGGTGGACTGACTCAGTGGGTCTCGGCATGGTCGACAACTCAACCAACTCTCCACCCATGAAGAAACCGGATTTGGGTTTCTCCATGAACAACAACACACCCATAAGGGAAGAAGAAGAAGAGGAGAAAGAAAACAGTGACGAACCAAAAGAGGGAGCAATTGAAGTAGCCACCACGCGCCGCCCTAGGGGCCGTCCATCTGGCTCAAAGAACAAGCCAAAACCGCCAATATTTGTCACCAGGGATAGTCCTAACGCTCTCCGAAGCCACGTCATGGAAATAGCTAACGGTGCTGACATCACTGATAGTGTTGTTCAGTTCGCCAGAAGGCGTCAGAGAGGTGTTTGTGTTTTAAGCGGTAGTGGGACTGTTGTTAACGTCACTCTGCGTCAGCCCATGGCACCAGGTGCAGTTATGACACTGACGGGCCGGTTTGAGATACTTTCTCTTACCGGCTCGTTTTTGCCAGGACCGTATGTACCTGGTGCATCTGGGCTAACAATTTATCTTGCTGGAGGGCAAGGAAAAGTTGTTGGCGGCGAGGTGGTGGGACCTGTTGTGGCTGCCGGGCCGGTAATACTAATCGCGGCTACGTTTTCAAATGCAACCTACGAGAGGTTGCCGGTGGAGGATGAAGTGGGGGAAGGGAATGGATCGCCACCGGGGATGAGTGGCAGTGAAGGGAAGAAGCCGGTTGGTGGATCCATCGGAGAGGATCAATCAACCATTCCAATGTATAATAATAATCTTACAAATGTGCAACCACAACAACTATTGAACCATGAAGTTGGTTATTCTAGTTGGGCTCATGGTAATGTTAGGGCACCGCCACCTTACTGA 852 0.5094 MAHRWWTDSVGLGMVDNSTNSPPMKKPDLGFSMNNNTPIREEEEEEKENSDEPKEGAIEVATTRRPRGRPSGSKNKPKPPIFVTRDSPNALRSHVMEIANGADITDSVVQFARRRQRGVCVLSGSGTVVNVTLRQPMAPGAVMTLTGRFEILSLTGSFLPGPYVPGASGLTIYLAGGQGKVVGGEVVGPVVAAGPVILIAATFSNATYERLPVEDEVGEGNGSPPGMSGSEGKKPVGGSIGEDQSTIPMYNNNLTNVQPQQLLNHEVGYSSWAHGNVRAPPPY 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0563 283 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 250 IPR014476 GO:0003680
Lal24g0563 283 MobiDBLite consensus disorder prediction 215 253 - -
Lal24g0563 283 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 214 - -
Lal24g0563 283 ProSiteProfiles PPC domain profile profile. 88 225 IPR005175 -
Lal24g0563 283 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 8 250 - -
Lal24g0563 283 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 205 IPR005175 -
Lal24g0563 283 MobiDBLite consensus disorder prediction 1 87 - -
Lal24g0563 283 PIRSF ESCAROLA 11 283 IPR014476 GO:0003680
Lal24g0563 283 MobiDBLite consensus disorder prediction 12 37 - -
Lal24g0563 283 CDD DUF296 92 175 IPR005175 -
Lal24g0563 283 Gene3D - 91 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0563 Lal-Chr24 3988455 3989306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0563 1 223 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 61.373 1.71e-81 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0563 - - gmx:100797639 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0563 24 3988455 3989306 Lal24g0563 24 3988455 3989306 ECH
Lal12g0650 12 4743265 4744937 Lal24g0563 24 3988455 3989306 LSH