Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0559 ATGGAGGAAACGCTTTTGGATGACATAATCAATCGATTGCTTGAAGTTCGTGGGCGTCCAGGGAAGCAAGTTCAGCTTTCTGAATCAGAGATCCGTCAGCTATGTACTGTTTCTAGACTCATTTTCTTGCAGCAACCTAATTTGTTGGACCTTGAAGCACCAATTAAGATTTCTGGTGACATACATGGTCAATATTCTGATCTCTTAAGACTTTTCGAGTATGGTGGGTTACCTCCTGAGGCCAACTACTTGTTTTTGGGGGATTATGTGGATAGAGGGAAGCAGAGTTTAGAAACAATATGCCTCCTCCTTGCTTATAAAATAAAGTATCCTGAGAATTTTTTCCTTTTGAGGGGAAACCATGAATGTGCTTCTATAAACCGCATATACGGATTTTATGATGAGTGTAAAAGAAGGTTCAATGTAAGGTTATGGAAAACTTTTACAGACTGTTTCAATTGCCTGCCCGTGGCAGCCCTCATTGATGAAAAGATCTTGTGTATGCATGGGGGACTTTCTCCTGACTTGGCTAATTTAGATCTGATTAGAAATCTTCAGCGTCCCACTGATGTGCCTGATACAGGTTTGCTTTGCGACCTCCTTTGGTCAGACCCAAGCAAAGATGTCCAAGGTTGGGGAATGAGTGACAGGGGAGTTTCATTTACATTTGGTGCTGATAAGGTCTCAGAGTTTCTTGAGAAACATGATTTGGATCTTGTTTGTCGCGCTCATCAGGTGGTGGAGGATGGATATGAGTTCTTTGCTAACCGACAGCTTGTAACAATATTTTCGGCGCCTAATTATTGTGGGGAGTTTGACAATGCTGGGGCTATGATGAGTGTTGATGAGACACTAATGTGCTCTTTCCAAATATTAAAGCCAGCTGATAAAAGGGCAAAGTTCAATTTCGGAAGCACAACCACTGCTAGGCCTGGAAGCTCTCCAGCAAGTGTAAAGTCCTTACAGTCCTTCCTGGGTACAAAAGCATGA 990 0.4242 MEETLLDDIINRLLEVRGRPGKQVQLSESEIRQLCTVSRLIFLQQPNLLDLEAPIKISGDIHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALIDEKILCMHGGLSPDLANLDLIRNLQRPTDVPDTGLLCDLLWSDPSKDVQGWGMSDRGVSFTFGADKVSEFLEKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKRAKFNFGSTTTARPGSSPASVKSLQSFLGTKA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0559 329 CDD MPP_PP1_PPKL 6 294 - -
Lal24g0559 329 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Lal24g0559 329 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Lal24g0559 329 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Lal24g0559 329 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Lal24g0559 329 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Lal24g0559 329 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Lal24g0559 329 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Lal24g0559 329 Gene3D - 1 305 IPR029052 -
Lal24g0559 329 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Lal24g0559 329 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 320 - -
Lal24g0559 329 MobiDBLite consensus disorder prediction 306 329 - -
Lal24g0559 329 SMART pp2a_7 26 296 IPR006186 GO:0016787
Lal24g0559 329 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 320 - -
Lal24g0559 329 Pfam Calcineurin-like phosphoesterase 55 246 IPR004843 GO:0016787
Lal24g0559 329 SUPERFAMILY Metallo-dependent phosphatases 18 298 IPR029052 -
Lal24g0559 329 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0559 Lal-Chr24 3962892 3968202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0559 49 242 Calmodulin-binding Proteins AT5G63870 32.314 3.96e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0559 K06269 - gmx:100799218 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0646 12 4722002 4728726 Lal24g0559 24 3962892 3968202 LSH
Lal13g0729 13 4772823 4777704 Lal24g0559 24 3962892 3968202 LSH