Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0558 ATGTGGTCAGGAGTGAAGAAGAGCCAATACGAGTTGTGTGAAGAAATTGGTCGTGGTCGTTTCGGAACCATTTTCCGTTGCTTCAATCCAACTACCAACCAATTCTACGCTTCCAAAATCATCCACAAATCTCTCTTAACCGATTCCACCGACCGCGAGTGTCTCCAAAACGAACCCAAATACATGTCCCTCCTTTCTCCTCACCCCAACATCCTCCAAATCTACGACTTCTACGAAGACGACGACGTTTTATCAATAGTAATGGAACTATGCCAACCCTTAACCCTATTCGATAAGATTGTCAACACAAACACTTTACCCGAACCACAAGCTGCATCAATCATGGTTCAGCTTCTATCAGCCCTGAGCCACTGCCACTGTCTCGGCGTGGCTCACCGCGACATAAAACCTGAAAACATTCTCTTCGATTCGAGGGAGAATATTAAGGTGGCGGATTTTGGGTCAGCGGAGTGGTTCGGTGAAGGGAGAAAGATGAGTGGGATAGTTGGGACACCGTATTATGTGGCGCCGGAGGTATTGTTGGGAAGGGATTATGATGAGAAAGTTGATGTTTGGAGCTGTGGTGTGATTTTGTATATAATGTTGGTTGGGGTTCCTCCGTTTTATGGTGATGATGCTGCTCAGATTTTTCAGGCTGTTGTTAGGGGTAATCTTAGGTTTCCTTCCAGGTTATTTAGGACTGTGTCTTCTTCTGCTAAGGATCTTTTGAGGAAGATGATTTGTAGGGATGCTTCTACAAGATTATCTGCTGAACAAGCCTTAAGGCATCCTTGGATCTTGAGTGGAGGAGAGATGGCATGA 822 0.4538 MWSGVKKSQYELCEEIGRGRFGTIFRCFNPTTNQFYASKIIHKSLLTDSTDRECLQNEPKYMSLLSPHPNILQIYDFYEDDDVLSIVMELCQPLTLFDKIVNTNTLPEPQAASIMVQLLSALSHCHCLGVAHRDIKPENILFDSRENIKVADFGSAEWFGEGRKMSGIVGTPYYVAPEVLLGRDYDEKVDVWSCGVILYIMLVGVPPFYGDDAAQIFQAVVRGNLRFPSRLFRTVSSSAKDLLRKMICRDASTRLSAEQALRHPWILSGGEMA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0558 273 Gene3D Phosphorylase Kinase; domain 1 3 92 - -
Lal24g0558 273 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 271 - -
Lal24g0558 273 SMART serkin_6 10 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0558 273 Gene3D Transferase(Phosphotransferase) domain 1 95 272 - -
Lal24g0558 273 Pfam Protein kinase domain 10 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0558 273 ProSiteProfiles Protein kinase domain profile. 10 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0558 273 CDD STKc_CAMK 9 265 - -
Lal24g0558 273 PIRSF ILK 2 261 - -
Lal24g0558 273 SUPERFAMILY Protein kinase-like (PK-like) 7 268 IPR011009 -
Lal24g0558 273 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1 7 271 - -
Lal24g0558 273 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0558 Lal-Chr24 3948497 3950698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0558 10 273 EF-hand Containing Proteins AT1G50700 42.697 1.35e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal24g0558 Pkinase 1.6e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0558 - K08794 gmx:548089 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0558 24 3948497 3950698 Lal24g0558 24 3948497 3950698 ECH
Lal13g0728 13 4763103 4764678 Lal24g0558 24 3948497 3950698 LSH