Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0555 ATGTCTTCTTCATCTTATCCTGTTCTTCCTTATTCCTCGACTCAGGCTGCATCGGCGAAGTCCAACATCAGAAGTGCTGGGCACATGTTTTCAACACCTGCTAAATGCCCTGATGACTTTACTTTTTCGCCTGTCTCGGAAATACACTCTCCAACATTCATTTCTCGCCCTCATGAAAGTGGTGATATTTCATTTGAACCATATCCATTTCAGGATTTTCTTCAGTTTCCTGATGGTGTTCCCGTCCAGAACAATCAGCTGGAACATAGTGCTTCTTACATATCTGGTGACAATGCACAAACAACTGATCCTGGGGACTGGATTGATGTAGAATCGTTAATTTCAGTTGATGTTGGTGATTCTCTTCTCTCAAATTGGACTCAGCTTCTTGGTGATGATAATGTTGCAGAACCGAAGCCAAAGGAGTCCCAGGTTTCACAGCAGCAGCAGCATGGGCAATCTACAGAACTTAATGGTCCTCCTAACTCAGTGTCAACCGCCCCGCAAACTAAATCAAGAATGCGTTGGACTCAAGAACTTCACGAGGCATTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGCGAGAAGGCTACTCCAAAGGGTGTCTTGAAGCTGATGAAAGTTGAAGGCCTAACCATCTATCATGTGAAAAGCCACCTACAGAAGTATAGAACTGCCAGATACAAACCTGAGCCATCAGAAGAAGGATCTTCTGAGAAAAGCTTGCCTGAAGTCGAAGAAATGAAGTCTCTAGACTTAAAAACGAGTAAGGGGATTACCGAAGCACTGCGGTTGCAGATGGAACTCCAGAAGCGGCTTCACGAACAACTTGAGATTCAAAGAGAGTTACAAATTCAAATTGAGAACCAAGGGAAACGTCTTCAAAAGATGTTTGAGAAACAGATAGAAATGGACAAGCCGTCTGCTTCAATATCAAGCACGGCGATAGCGCTACCTTCTCCTATTGACAATTTAGATACCACAAATGAGGATCACGATAAAATTCGATTAACCTTGCCCGAAGAAAGTACCCAGGATGCATGCAAAAAGCAAAAGAGAGATGATGCTAAACATGAGCTGGGAGATGACCAGTTTTCTGCACAACTATCGAAACGGATGAAAAGTTTATGA 1131 0.4332 MSSSSYPVLPYSSTQAASAKSNIRSAGHMFSTPAKCPDDFTFSPVSEIHSPTFISRPHESGDISFEPYPFQDFLQFPDGVPVQNNQLEHSASYISGDNAQTTDPGDWIDVESLISVDVGDSLLSNWTQLLGDDNVAEPKPKESQVSQQQQHGQSTELNGPPNSVSTAPQTKSRMRWTQELHEAFVEAVNQLGGSEKATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYKPEPSEEGSSEKSLPEVEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRELQIQIENQGKRLQKMFEKQIEMDKPSASISSTAIALPSPIDNLDTTNEDHDKIRLTLPEESTQDACKKQKRDDAKHELGDDQFSAQLSKRMKSL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0555 376 MobiDBLite consensus disorder prediction 140 173 - -
Lal24g0555 376 MobiDBLite consensus disorder prediction 337 365 - -
Lal24g0555 376 SUPERFAMILY Homeodomain-like 169 225 IPR009057 -
Lal24g0555 376 Pfam MYB-CC type transfactor, LHEQLE motif 259 303 IPR025756 -
Lal24g0555 376 Pfam Myb-like DNA-binding domain 173 224 IPR001005 -
Lal24g0555 376 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 171 225 IPR006447 GO:0003677
Lal24g0555 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 169 228 IPR017930 -
Lal24g0555 376 Coils Coil 260 280 - -
Lal24g0555 376 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 4 375 IPR044848 GO:0003700
Lal24g0555 376 MobiDBLite consensus disorder prediction 225 247 - -
Lal24g0555 376 MobiDBLite consensus disorder prediction 133 173 - -
Lal24g0555 376 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 4 375 - -
Lal24g0555 376 Gene3D - 170 229 - -
Lal24g0555 376 MobiDBLite consensus disorder prediction 337 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0555 Lal-Chr24 3914745 3924588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0555 73 315 G2-like Transcription Factor Family AT4G28610 54.688 3.49e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal24g0555 Myb_DNA-binding 1.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0555 - - mtr:MTR_1g080330 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0639 12 4666526 4670125 Lal24g0555 24 3914745 3924588 LSH
Lal13g1051 13 7780574 7786596 Lal24g0555 24 3914745 3924588 LSH
Lal11g1080 11 14483495 14491161 Lal24g0555 24 3914745 3924588 PCT
Lal18g0235 18 1957189 1961086 Lal24g0555 24 3914745 3924588 PCT
Lal24g0555 24 3914745 3924588 Lal11g1080 11 14483495 14491161 PCT