Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0545 ATGGCCATCGCTACTCAAACCAAGCCTAAGAAAACGGTGTCGTCTAGGAAGACTCTTTCTCACCCTCCCTTCGCTCAGATGATAACTGAAGCGATTTCGAATCTGAAAGAGAGAACTGGTTCAAGTCAAATTGCGATCGCAAAGTTCATAGAGGAGAAGCATAAGGATTTACCTTCAACCTTCAAGAAGCTTCTTCTCCAGAATCTGAAAAGATCTGTTGCCGCTGGGAAACTCGTGAAGGTTAAGAACTCTTTCAAGCTTGCTCCTATTGTTAAAGCTTCCGTTAAAGCATCTAGTGCTGATGTTAAGAAGCCCAAAACTGTTGCTAAACCTAAAACTGTGTCCAAGGCTAAAACTGTTGCTAAACCTAAAACTGTTGCTAAGCCTAAAACTGTGGCTAAGCCTAAAACTGTGGCTAAACCTAAAGCTGCAGTAGCAACTAAAGCTAAGCCGAAAGCCGCTGTGAAATCAAAGGCTGTTACTAAGCCTAAGGCAAAAGCTGCGGCTACCGGTGCTAAGCCAAAGGCGAAGGTCGTGAAGTCTCCGGCGAAGAAAGTGGCTGCTAATGCAGTGAAAAGTGCGAAAAAGGCTAAGAGTGTGAAATCGCCGGTGAAGAAAGTAGCGGCAAAAAAAGCAAAGAAGTGA 645 0.4434 MAIATQTKPKKTVSSRKTLSHPPFAQMITEAISNLKERTGSSQIAIAKFIEEKHKDLPSTFKKLLLQNLKRSVAAGKLVKVKNSFKLAPIVKASVKASSADVKKPKTVAKPKTVSKAKTVAKPKTVAKPKTVAKPKTVAKPKAAVATKAKPKAAVKSKAVTKPKAKAAATGAKPKAKVVKSPAKKVAANAVKSAKKAKSVKSPVKKVAAKKAKK 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0545 214 CDD H15 20 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal24g0545 214 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal24g0545 214 Pfam linker histone H1 and H5 family 21 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal24g0545 214 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 3 150 - -
Lal24g0545 214 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal24g0545 214 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal24g0545 214 PRINTS Histone H5 signature 106 120 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal24g0545 214 PRINTS Histone H5 signature 140 157 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal24g0545 214 PRINTS Histone H5 signature 162 181 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal24g0545 214 PANTHER HISTONE H1 3 150 - -
Lal24g0545 214 MobiDBLite consensus disorder prediction 1 22 - -
Lal24g0545 214 MobiDBLite consensus disorder prediction 198 214 - -
Lal24g0545 214 SUPERFAMILY "Winged helix" DNA-binding domain 17 96 IPR036390 -
Lal24g0545 214 MobiDBLite consensus disorder prediction 119 214 - -
Lal24g0545 214 Gene3D - 15 95 IPR036388 -
Lal24g0545 214 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0545 Lal-Chr24 3838861 3839799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0545 7 87 Single Myb Histone (SMH) Gene Family AT1G72740 33.333 2.24e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0545 K11275 - gmx:100785055 136.346
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0711 13 4617588 4621628 Lal24g0545 24 3838861 3839799 LSH