Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0542 ATGAATCCTGCACCAGTTTGCAGGAAGTGCATATATGAGAAATTCTCAGATGAGGAGGTGGATTGTTGTCCAGTGTGCAATATTGATCTGGGCTGCCTTCCAGCCGAAAAACTCAGGCCAGACCATAATTTGCAAGACATAAGGGCAAAAATATTCCCTTTTAAAAAGAAAAATATTAAGAGTCCAGAAGTTTTGTCTTCAATATCCCTGCCTGCAAAGAGGAAGGAAAGATCGCTTTCATCATTGGTGGTTAGTGCTCCGAAAGTTTCGATGCAAACTGGCTTTACTGGAAAGAGAACAAAAACCAGTACAAGAAAGGCTACTGCTTTACGTGGATGCAGTTTTATTCTTGAAGAAACCATAAAGAAGGAAACAACGTGTGAAGATAATATGGATTCTTCTGTGGCTGAACCTTCTAAAAAACATAAGCCTGGTGAAGATATAGAGGACAGTGTGGAACTTACAGAAGGGAAGGCTGATCTATGGACACCATTGAACTGTCTTGTTGAAGCTGCCAATAGAACAAAGTCTTCTAGGTCAAATTCACTTGCAACTCCTTCCAAACTAGATTCTCCAACTACTCCTTGTGGTGATGTTGATATGTCTACAAATTCAAACAAACCAGAGCTACCTGCTTCTCTCCAGAGTGAATTAAACATTTCTAAAACCAAAAATAAGGATAACGGACATAAAACAAAATTTGGAGATGACAAGGATGGAAGCAGCTTGCCCTCAAGACCAGTGAAGCGAAAGAGGTTGCGTCCTGCGGGTCAGAAAAGAGTTGTAGCATCTGAGATGTCTGCCTCAGCCCAAGTCGCGCTAGATGCTTCAAAGGGGAAGTACAACAGAAAAAACAGTCCCATTTGGTTTTCATTAGTTGCATCAGAGGACCAGAAAGGAGATGTTCCCCTGCCACAGATCTCAGCATGTTATTTGAGAATAAAGGATGGCACTGTACCTGTCTCGTTTATTCAAAAGTACCTTGTGAAGAAACTTAATCTTGCCAATGAAGCAGAGGTGGAAATAATGTGCCGCGGTCAGCCAGTGCTCCCATCTCTGCAACTGCATAACTTAGTAGATCTATGGTTCCGGACTGCATCAACCTCGAAAAAGATACCGGCAACCGTGGGGTCCTCGGCTAAGGATTTTGTAATGGTTTTATCATATTGTCGAAAGCCCTTGCCTACTTGA 1191 0.4223 MNPAPVCRKCIYEKFSDEEVDCCPVCNIDLGCLPAEKLRPDHNLQDIRAKIFPFKKKNIKSPEVLSSISLPAKRKERSLSSLVVSAPKVSMQTGFTGKRTKTSTRKATALRGCSFILEETIKKETTCEDNMDSSVAEPSKKHKPGEDIEDSVELTEGKADLWTPLNCLVEAANRTKSSRSNSLATPSKLDSPTTPCGDVDMSTNSNKPELPASLQSELNISKTKNKDNGHKTKFGDDKDGSSLPSRPVKRKRLRPAGQKRVVASEMSASAQVALDASKGKYNRKNSPIWFSLVASEDQKGDVPLPQISACYLRIKDGTVPVSFIQKYLVKKLNLANEAEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKIPATVGSSAKDFVMVLSYCRKPLPT 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0542 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 79 IPR013083 -
Lal24g0542 396 MobiDBLite consensus disorder prediction 126 152 - -
Lal24g0542 396 MobiDBLite consensus disorder prediction 173 222 - -
Lal24g0542 396 MobiDBLite consensus disorder prediction 223 246 - -
Lal24g0542 396 MobiDBLite consensus disorder prediction 173 259 - -
Lal24g0542 396 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 7 392 - -
Lal24g0542 396 Gene3D - 267 373 - -
Lal24g0542 396 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 7 392 IPR044807 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0542 Lal-Chr24 3824981 3829648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0542 6 315 C3H Transcription Factor Family AT2G30580 40.729 4.90e-64 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0542 K16277 - gmx:100783999 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1906 1 21282004 21293960 Lal24g0542 24 3824981 3829648 ECH
Lal24g0542 24 3824981 3829648 Lal24g0542 24 3824981 3829648 ECH
Lal13g0707 13 4600322 4605169 Lal24g0542 24 3824981 3829648 LSH