Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0541 ATGGGTGGTAATGGGTCGGAGGGGTTAGGTGATGATTTCTTTGAGCAGATTTTAGCAGTTCCTGAAGCCTCTTATGGAAGGAGTTTAAGTGATGTTGGGTCCATGCCAATGGGGTTGCAATTGGGTTCCAATAATGGTGTTGGTGATGGGTTGAGAGGTGAAGGGTCCTTAGGAATAAGGGTGGGTATGCCTTTGGGATTAAATTTGGAGCAAGGTGCATTTATGAGACACCAAGGCCATGATGTTGAGGGTAACATTACCAACAGTCATAATCAACATCATCAACAACAACAACTCCTTCATCTTAATAGCACCTCTCAATCTTCCTCTTCTACTGCAGGAATCAATGATAGGGATATGCAAATGAGGGGTACGTTTTCAGGGTTAGGACAATTACATAATCCTCCTCCTACTCATGCTCATGCTCATGCTCAATCTATTCGCCCCACACTGCTATCTCCTCAGCCACAATTCCATCACCACCAACAGCCCTTTCAAACCCAGCCACAACCACCAATGTCTGTTACTGCTATGCCACATCATGCACCTGGCATCCGCCCTCGAGTGCGAGCTAGAAGAGGCCAAGCCACGGACCCTCATAGTATCGCCGAACGGTTGCGTCGCGAAAGAATCGCTGAAAGGATGAAAGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACGGATAGAGCCATTATGCTTGATGAAATTATGGAATATGTGAAGTTCCTAAGGCTCCAGGTTAAGGTCCTGAGTATGAGTAGATTGGGTGGAGCTGGTGCAGTTGCTCAGCTTGTCTCTGATGTTCCCTTTTCTGCTGTGGAGAAACAGGGAGAGGACAATGGTGGAGGAAATGAACAAGAATGGGAGAAGTGGTCAAATGATGGCACAGAAGAAAAAGTAGTCAAACTTATGGAAGAAGATGTTGGAGCTGCAATGCAATTTCTTCAGTCTAAGGCACTATGTATTATGCCTATATCTTTAGCCTCAACCATTTTTCATATGCCTCAATCAGAACCATCATCACTCATCAAGCCTGAATCAAACAACTCATAG 1056 0.4508 MGGNGSEGLGDDFFEQILAVPEASYGRSLSDVGSMPMGLQLGSNNGVGDGLRGEGSLGIRVGMPLGLNLEQGAFMRHQGHDVEGNITNSHNQHHQQQQLLHLNSTSQSSSSTAGINDRDMQMRGTFSGLGQLHNPPPTHAHAHAQSIRPTLLSPQPQFHHHQQPFQTQPQPPMSVTAMPHHAPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAIMLDEIMEYVKFLRLQVKVLSMSRLGGAGAVAQLVSDVPFSAVEKQGEDNGGGNEQEWEKWSNDGTEEKVVKLMEEDVGAAMQFLQSKALCIMPISLASTIFHMPQSEPSSLIKPESNNS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0541 351 SMART finulus 201 250 IPR011598 GO:0046983
Lal24g0541 351 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 338 - -
Lal24g0541 351 MobiDBLite consensus disorder prediction 281 295 - -
Lal24g0541 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 254 IPR036638 GO:0046983
Lal24g0541 351 MobiDBLite consensus disorder prediction 87 145 - -
Lal24g0541 351 MobiDBLite consensus disorder prediction 154 173 - -
Lal24g0541 351 MobiDBLite consensus disorder prediction 87 118 - -
Lal24g0541 351 MobiDBLite consensus disorder prediction 275 295 - -
Lal24g0541 351 Gene3D - 190 252 IPR036638 GO:0046983
Lal24g0541 351 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 338 - -
Lal24g0541 351 Pfam Helix-loop-helix DNA-binding domain 200 244 IPR011598 GO:0046983
Lal24g0541 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 244 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0541 Lal-Chr24 3816750 3821134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0541 155 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 68.367 8.27e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal24g0541 HLH 6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0541 - - lang:109355094 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0183 12 1281693 1285913 Lal24g0541 24 3816750 3821134 ECH
Lal24g0541 24 3816750 3821134 Lal24g0541 24 3816750 3821134 ECH
Lal13g0705 13 4578794 4583255 Lal24g0541 24 3816750 3821134 LSH