Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0538 ATGTTGAAACAAAAGCCCAATAAAGCTTACAGTAATGAAGACTTATTGACCGAGTGTCAGACAACCCCTTTTCAATCTTTTTATGAGACTACATTTTGTCCTTTTCTCACTCTGAATGAGAATGGAGATAGAGATTCTTCTGCAACTTCGTTTGGTGCTTCTTCCTCAACAACGGTGTCGTTTTGCAACTACACTTTCATTCTTCAACTTCGCATTCTCCGCTTTGTAACTCATCTTTTTCTTCTAACTTCTCTCTACATTTTCAATCTCTCGGATCCATTCAACTTCTTTTCAAATCTACCGACTCACCTTACCTCAGGAGAGGGAATTCACTTACTAATTGATGATATGGAGCAGTATGAAGTACTTGAGCAAATTGGAAAAGGTGCCTTTGGTTCTGCTCTTCTTGTAAGACATAAGCATGAGAAGAAAAAGTATGTTCTGAAGAAGGTTCGTCTTGCCCGCCAAACTGAGCGCTCTCGTAGATCTGCGCACCAGGAGATGGAGCTCGTCTCTAAATTGAAAAACCCATTTATTGTGGAGTATAAGGATTCGTGGGTAGAAAAGGGCTGCTATGTCTGCACTATTATAGGTTATTGTGAGGGCGGAGATATGGCGGAAGCTATAAAGAAAGCTCATGGTGTCCTGTTTCCTGAGGAGAAACTTTGTAGGTGGCTTGTTCAACTTCTCATGGCACTTGACTACTTGCACGTGAACCACATTCTCCACCGTGATGTCAAGTGTTCAAATATCTTCTTGACGAAAGATCGTGACATACGTCTTGGTGACTTTGGACTGGCCAAAATTTTGTCTTCTGATGATCTTACTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATATGAAATGACATCACATAAGCCGGCATTCAAAGCATTTGATATACAAGCATTGATTAACAAGATTAATAAGTCCATTGTGGCTCCTTTGCCAACAAAATATTCTGGTTCATTCCGGAGTCTTGTTAAAAGCATGTTGCGGAAAAATCCAGAGCTCAGGCCCAGTGCTACAGAACTACTTGGGCACCCATATCTTGAACCTCATGTTCATAAGGTCCATCTCAAACTCAATAGCCCCAGGCGAACTACATTACCTGTTCATTGGCCAGAGTCGAACTACGTGAAGAAAACTAGGTTTGTGGATCCAGAAGATGATCCTATTCCCACCTATAAGGATAGGCGGTATTCTTTCTGCAATGGTCGGACTCTAAATCCTAGTATATCTGGAGCTGATCAAGATTCTGTATGCTCTACCCTAGAAATAGATTGTATTCCGGATCATATAAATCAAAGGTTAGCAGAATTATGTGTTGGAGATAACCATGAAGTGAAGTCAATTCATAAGCCTCTTTCCAGAACTTCTAGTATTCCTAATACTACAAGGCTGCCTATATCTAAAGTTTCTGTCACCAAGAAGAAATCAATGGAACCCTCAAAGAATTATAAAGTGGTAAGGCAAACTCGTTTCTCTACACAATGGGGTAATTGTATTGAACTCCCTAAGCTTCCTGTTTCACACAATACCGCAAAAGCTTCCCATACAAACCGCAGAGCATCATTTCCACTCCCAATGGGTGGTACTCAGCAGCCTTCTCGCAGGTCCAGTGTTGGTTTGCTTAGCCACGTGTCTTCGCCAGATATCTCAGTTAACTCTCCCCGTATCGATAAGATAGCTGAATTTCCATTAGCATCATATGAAGATTCATCGTTTCCCATCAATAGAACATCAACATCTGCACAAGGTTCTGCTGGCAACCCACCTTGTGGCAATCGTTCAACTGTGATAGACAAATGCACGGTAGAGGTATATGATACACCTAGTTGTACAGATGCTTGGCAGGGAATCAAGCGCAGCATGCTAAAGGAAATCAATGAGGGTAAAAGTGGTTCCTCTGATCAAAATGCAACAGCAGGTCCATCAAGCCACACCTCATCAGACTTGCGCCGCCGACAATTTGATACATCATCATACCAGCAAAGGGCTGAAGCCTTAGAAGGGTTGCTAGAATTTAGTGCAAGATTGCTCCAGCAGGCAAGGTATGACGAACTTGGGGTTTTGCTGAGACCATTTGGACCTGAAAAGGTTTCCCCAAGGGAAACTGCAATCTGGTTGAGTAAGAGCATCAAAGAGAACACTCTCAGCCCTGAAGAATCCCCATAA 2247 0.4232 MLKQKPNKAYSNEDLLTECQTTPFQSFYETTFCPFLTLNENGDRDSSATSFGASSSTTVSFCNYTFILQLRILRFVTHLFLLTSLYIFNLSDPFNFFSNLPTHLTSGEGIHLLIDDMEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKVRLARQTERSRRSAHQEMELVSKLKNPFIVEYKDSWVEKGCYVCTIIGYCEGGDMAEAIKKAHGVLFPEEKLCRWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDRDIRLGDFGLAKILSSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSHKPAFKAFDIQALINKINKSIVAPLPTKYSGSFRSLVKSMLRKNPELRPSATELLGHPYLEPHVHKVHLKLNSPRRTTLPVHWPESNYVKKTRFVDPEDDPIPTYKDRRYSFCNGRTLNPSISGADQDSVCSTLEIDCIPDHINQRLAELCVGDNHEVKSIHKPLSRTSSIPNTTRLPISKVSVTKKKSMEPSKNYKVVRQTRFSTQWGNCIELPKLPVSHNTAKASHTNRRASFPLPMGGTQQPSRRSSVGLLSHVSSPDISVNSPRIDKIAEFPLASYEDSSFPINRTSTSAQGSAGNPPCGNRSTVIDKCTVEVYDTPSCTDAWQGIKRSMLKEINEGKSGSSDQNATAGPSSHTSSDLRRRQFDTSSYQQRAEALEGLLEFSARLLQQARYDELGVLLRPFGPEKVSPRETAIWLSKSIKENTLSPEESP 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0538 748 SMART serkin_6 120 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0538 748 MobiDBLite consensus disorder prediction 654 683 - -
Lal24g0538 748 Gene3D Phosphorylase Kinase; domain 1 103 199 - -
Lal24g0538 748 ProSiteProfiles Protein kinase domain profile. 120 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0538 748 Pfam Protein kinase domain 120 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal24g0538 748 CDD STKc_Nek 119 374 - -
Lal24g0538 748 Gene3D Transferase(Phosphotransferase) domain 1 200 391 - -
Lal24g0538 748 MobiDBLite consensus disorder prediction 654 674 - -
Lal24g0538 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Lal24g0538 748 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 117 733 - -
Lal24g0538 748 SUPERFAMILY Protein kinase-like (PK-like) 117 426 IPR011009 -
Lal24g0538 748 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Lal24g0538 748 MobiDBLite consensus disorder prediction 536 576 - -
Lal24g0538 748 PANTHER SERINE/THREONINE-KINASE NEK4 117 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0538 Lal-Chr24 3797511 3805648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0538 126 402 MAP Kinase Kinase Kinase AT1G53570 31.338 5.86e-36 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lal24g0538 Pkinase 4.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0538 K08857 - gmx:100804898 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0538 24 3797511 3805648 Lal24g0538 24 3797511 3805648 ECH
Lal13g0695 13 4522238 4529382 Lal24g0538 24 3797511 3805648 LSH
Lal5g0088 5 849502 856462 Lal24g0538 24 3797511 3805648 PCT
Lal3g1503 3 20813583 20823392 Lal24g0538 24 3797511 3805648 PCT
Lal24g0538 24 3797511 3805648 Lal5g0088 5 849502 856462 PCT
Lal24g0538 24 3797511 3805648 Lal3g1503 3 20813583 20823392 PCT