Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0537 ATGTTTGATGGAGTAACAGACCAGTTCCATCAATTCATAACACCAATGACTTCACTTCCTCTTCACTTACCCTTCCCTCTTCATTCTTCTGCTGTTGTTGCTGCACCAACCAATACCACTTTCCCTTCTTTTGATCCTTATAACCCTTCTCCTCATCAATTGCCACTTCAACATCAACCCAATCTCTTGCGCCAATTACACCATCCTTCTACCCACAAAGAACATGAACATGAGAAGGGTGAAGAACATAGTACTTTACAAATGAACTTTGAGATTGAAAGAGATCATAATATTGATCCTTGGACTAATGATGAAGTACTTGCACTTTTGAGAATCAGATCTAGCATGGAGAGTTGGTTCCCTGAACTCACTTGGGAACATGTCTCAAGGAAGCTAGCAGAGCTTGGATATAAGAGGAGTTCAGATAAATGCAAGGAGAAGTTTGAAGAAGAAAGCAGATATTTCAACAACATTAGCTACACCAAGAATAATAATTATCGGTTTCTTAGTGAGATTGAAGAGCTTTATAATCATGGTGATAATCATGAAGTTGCTGAGATTGAAAAGCCAACAAACATAGAAGAAGGACAAGACAAGATCATGGACCTAGAAGAAGGTTCAAGAAAACAAAATGAGCAAGGTGATAATGAAGAAGAGATGGTTGGAGAAAAAGCAAAGGAGGACAAGAGGCCTAAGAGGAAGAGGCCAAATAGGTTTGAGATGTTCAAGGGTTTTTGTGAGAGCATTGTGCACAAGATGATGGAACAACAAGAAGAGATGCATAACAAGTTGATTAAAGATATGATGAAGAGAGATGAAGAGAAGATTGCAAGGGAAGAAGAATGGAAGAAGCAAGAGATGGATAGGATGAACCAAGATCTTGAGATTATAGCTCAGGAGCAAGCTATTGCTGGTGATAGACAAGCCAATATTATTGAATTCTTGAACAAATTCTCAACAACTGTTCCTTCACCTAACTCAAGCAAAATCAAGGTAACAGATGTTTCAAACCCACATATTTGCACTACTCCTTCTTCATCACCATCATCACAAAACCCTAATCCTAATATGGTTCTAGAAAACCCTAGTTCTATTCCTTCTGAGAAAGATGGTGTTGGGAGAAGATGGCCAAAAGATGAAGTGTTGGCACTGATAAATCTCAGGTGCAGTAGTCTTAATAATAACAACAATGAAGAGAAGGAAGGAAACAAGCCACCTCTTTGGGAGAGAATCTCACAAGGGATGTTGGAATTAGGATATGAGAGAAGTGCAAAAAGATGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAAAAAAGCAAAGGATGTTAATAAGAAAAGGTCTCTTGATTCTAGGACTTGTCCTTACTTCCACCAATTAAACAATCTGTATAATCAAGGAAGGCTTGTTCTACATTCTGAAAAGTCAAAAAATGAGTTAACTCCACAAGCAAATCAAAATCAAAGCCAAATAGCTGAGCCTTATTCTGAAGTGGAGTGTGGTGGTTTCAGTATGCAGCAGCAACAGGTTGATCATCATGGAGGTGAGAAAACTTTGGTGCAAGTACCATCTTTGGATTTTGATCAGTTTTAA 1596 0.3835 MFDGVTDQFHQFITPMTSLPLHLPFPLHSSAVVAAPTNTTFPSFDPYNPSPHQLPLQHQPNLLRQLHHPSTHKEHEHEKGEEHSTLQMNFEIERDHNIDPWTNDEVLALLRIRSSMESWFPELTWEHVSRKLAELGYKRSSDKCKEKFEEESRYFNNISYTKNNNYRFLSEIEELYNHGDNHEVAEIEKPTNIEEGQDKIMDLEEGSRKQNEQGDNEEEMVGEKAKEDKRPKRKRPNRFEMFKGFCESIVHKMMEQQEEMHNKLIKDMMKRDEEKIAREEEWKKQEMDRMNQDLEIIAQEQAIAGDRQANIIEFLNKFSTTVPSPNSSKIKVTDVSNPHICTTPSSSPSSQNPNPNMVLENPSSIPSEKDGVGRRWPKDEVLALINLRCSSLNNNNNEEKEGNKPPLWERISQGMLELGYERSAKRCKEKWENINKYFKKAKDVNKKRSLDSRTCPYFHQLNNLYNQGRLVLHSEKSKNELTPQANQNQSQIAEPYSEVECGGFSMQQQQVDHHGGEKTLVQVPSLDFDQF 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0537 531 MobiDBLite consensus disorder prediction 322 363 - -
Lal24g0537 531 CDD GT1 374 442 - -
Lal24g0537 531 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 336 524 - -
Lal24g0537 531 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 13 323 - -
Lal24g0537 531 ProSiteProfiles Myb-like domain profile. 375 435 IPR001005 -
Lal24g0537 531 MobiDBLite consensus disorder prediction 204 236 - -
Lal24g0537 531 PANTHER - 336 524 - -
Lal24g0537 531 PANTHER - 13 323 - -
Lal24g0537 531 ProSiteProfiles Myb-like domain profile. 93 152 IPR001005 -
Lal24g0537 531 CDD GT1 101 158 - -
Lal24g0537 531 MobiDBLite consensus disorder prediction 322 374 - -
Lal24g0537 531 Pfam Myb/SANT-like DNA-binding domain 374 463 IPR044822 -
Lal24g0537 531 Pfam Myb/SANT-like DNA-binding domain 99 162 IPR044822 -
Lal24g0537 531 Coils Coil 193 213 - -
Lal24g0537 531 Gene3D - 101 157 - -
Lal24g0537 531 Gene3D - 376 441 - -
Lal24g0537 531 SMART sant 372 437 IPR001005 -
Lal24g0537 531 SMART sant 97 154 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0537 Lal-Chr24 3787595 3790026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0537 1 467 Trihelix Transcription Factor Family AT5G28300 39.613 1.00e-100 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lal24g0537 Myb_DNA-bind_4 1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0537 - - ccaj:109795059 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0537 24 3787595 3790026 Lal24g0537 24 3787595 3790026 ECH
Lal12g0620 12 4500314 4502870 Lal24g0537 24 3787595 3790026 LSH
Lal13g0694 13 4510294 4512958 Lal24g0537 24 3787595 3790026 LSH