Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0528 ATGGCTTTTGATTTAAGTTCGGTAGTTTCGAAATTGCAAATGGTATCCACTTCTGATCATGCATCTGTAGTGTCAATGAATCTATTTGTGGCACTTCTATGTGCTTGTATTGTTATTGGCCATCTTCTTGAGGAGAATCGTTGGATGAATGAATCTATCACTGCCCTTTTGATTGGTCTTTGCACTGGTGTAATCATTTTGCTGTTTAGTGGTGGCACAAGCTCACGCCTTCTTGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTTCCACCTATAATATTCAATGCTGGGTTTCAAGTGAAAAAGAAGCAGTTTTTTGTCAACTTCATGACCATCATGTTGTTTGGTGCTATTGGTACATTAATATCTTGTACCATCATAACTTTGGGTATTTCACAAGTTTTAGAGAGGATGAATATCGGTCCACTGGAAATAGGAGATTATCTAGCAATTGGTGTAATATTTGCTGCGACCGATTCTGTGTGCACATTGCAGGTGCTAAATCAGGATGAAACACCTCTATTGTACAGTCTTGTATTTGGAGAAGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCAAGAGCTTTGACCTTGAGCAAATTGACCTGTCAATTGCCCTGCAATTTCTTGGCAACTTCTTGTATCTGTTCATCACAAGCACATTGCTTGGTGTTTTGGTAACTGTCTTTCTCCTTCTAATTCCCTCATGCATGCATTACAAAATTACATGGACAAGATCTATATCACTAGTGATCATGCACATTAATATTGATATTGCATGTGGCTCTGGTCTAATGTATCTCCACCGCCTTGCAGTCAGGCACTCTACAGATCGAGAGGTTGCTCTTATGATGCTAATGGCATACCTGTCCTACATGCTGGCTGAGTTATGCTACCTGAGTGGCATTTTAACTGTATTCTTTTGTGGGATTGTTATGTCTCATTATACTTGGCATAATGTGACAGAGAGCTCAAGAGTCACCACAAAGCATGCTTTCGCAACCTTGTCATTTGTTGCTGAGATCTTTATCTTCCTTTATGTTGGTATGGATGCCATGGACATTGAAAAGTGGAGGTTTGTCAGTGATAGCCCTGGAACATCCGTAGCAGTGAGTTCAGTATTGTTGGGTCTATTACTTGTTGGAAGAGCAGCTTTTGTTTTCCCGTTATCCTTCTTATCTAACTTATTTAAAAAGTCACAAAGTGAGAAGCTTTCCTTCAGACAGCAGGTTATCATCTGGTGGGCTGGTCTTATGCGAGGTGCTGTTTCTATTGCACTTGCTTATAATCAGTTCACGATGTTGGGGCATACACAACTACGAACCAATGCAATCATGATTACTAGCACAATTACTGTTGTGCTTGTCAGCACAGTGGTGTTTGGTTTGATGACAAAGCCACTGATAAGGCTTTTGCTGCCTCGTGGCCCTCCTAAAGGCACAACCAGTATGATAAGCACAGATCCTCCTACCCCAAAATCAGTCACTATCCCACTTCTAGGAAGTGCTCAAGAGTCTGAAGCTGATATCGGCGGCCATGAAATTCATCGTCCTGGCAGCCTCCGCGCCTTGCTATCCACTCCAACACACACTGTTCACCGATTTTGGCGCAAGTTTGATAATGCATTCATGCGTCCCGTTTTCGGTGGCAGAGGTTTTGTTCCTGTTGAGCCTGGCTCGCCATCTGAACGCAATGGTCATCAATGGCGTTGA 1728 0.4196 MAFDLSSVVSKLQMVSTSDHASVVSMNLFVALLCACIVIGHLLEENRWMNESITALLIGLCTGVIILLFSGGTSSRLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLISCTIITLGISQVLERMNIGPLEIGDYLAIGVIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIKSFDLEQIDLSIALQFLGNFLYLFITSTLLGVLVTVFLLLIPSCMHYKITWTRSISLVIMHINIDIACGSGLMYLHRLAVRHSTDREVALMMLMAYLSYMLAELCYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDAMDIEKWRFVSDSPGTSVAVSSVLLGLLLVGRAAFVFPLSFLSNLFKKSQSEKLSFRQQVIIWWAGLMRGAVSIALAYNQFTMLGHTQLRTNAIMITSTITVVLVSTVVFGLMTKPLIRLLLPRGPPKGTTSMISTDPPTPKSVTIPLLGSAQESEADIGGHEIHRPGSLRALLSTPTHTVHRFWRKFDNAFMRPVFGGRGFVPVEPGSPSERNGHQWR 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0528 575 PANTHER SODIUM/HYDROGEN EXCHANGER 278 574 IPR018422 GO:0006812|GO:0015299|GO:0016021
Lal24g0528 575 PANTHER SODIUM/HYDROGEN EXCHANGER 7 239 IPR018422 GO:0006812|GO:0015299|GO:0016021
Lal24g0528 575 Gene3D - 146 197 - -
Lal24g0528 575 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lal24g0528 575 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lal24g0528 575 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lal24g0528 575 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lal24g0528 575 PANTHER SODIUM/HYDROGEN EXCHANGER 2 278 574 - -
Lal24g0528 575 PANTHER SODIUM/HYDROGEN EXCHANGER 2 7 239 - -
Lal24g0528 575 Pfam Sodium/hydrogen exchanger family 30 242 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lal24g0528 575 Pfam Sodium/hydrogen exchanger family 264 474 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0528 Lal-Chr24 3698952 3704950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0528 5 573 Antiporters AT3G05030 69.877 0.0 792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0528 - - gmx:100816746 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0528 24 3698952 3704950 Lal24g0528 24 3698952 3704950 ECH
Lal13g0678 13 4381589 4387303 Lal24g0528 24 3698952 3704950 LSH
Lal18g0333 18 2807904 2814524 Lal24g0528 24 3698952 3704950 PCT
Lal24g0528 24 3698952 3704950 Lal18g0333 18 2807904 2814524 PCT