Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0524 ATGGACCCTTTTTTCAAACATTTCAACGCCTCTGTTGCGATTGTAATAGCTATTCCCTTATCCGCTATTCTTCTAATGAGTTTCTACACAATCTACACTCGTTGCTGCACTCATTCACCCTCCTACAACTTCGACAACACTATCATCAATACAAGATGCTCCCGTAGAATGACACGTGGCCTCGACTCTTCTGTGATCGAAACATTCCCCATTCTTGAATACCTCGTCGTGAAAAATCACAACAATGGAAAATGCATTCTTGAATGCGCTGTTTGTCTCGACGAATTTGAAGACGATGAAACGCTGCGTTTGATTCCCAAGTGTGACCATGTTTTCCACCCTGAGTGCATTGATGAGTGGTTTGAATCTCATACAACATGCCCTGTTTGTCGTGCTAATCTTGTTCCTAACCCGCAAGGTATTGAATCGCAAAACGACGTCATTTTAACGGTTCCAGAACAACAAGAGAGGGAGAGAAATGAACAATCCAATGTTATTTTGATTAACCAGACACTGAACCGGATAAGAACCAAAAGGTCGCGGTCGAACCGGAAGAGCCAGTTTCCAAGGTCTTACTCGACCGGGCATTCATTGATTCAACCGGGTGAAAATACGGAGCGGTTCACTTTGAAATTGTCTTTTGATGTGAAGGAGAAGATAATGCAAAACCCGAACCCAAAATTTAATCGAGCGAGAAGTATGGTTATATTACATAGGGAATTGGATCAAGGGTTTAAATCAGACCGGTTTATTTTCACCATGACGCCACCGTTCTTAGTCAGGGCATCATCGTTGAAGTCACCGAGAGTGACTAATAACGTCGCCACACTGCCGCAACTGCCACCGTCAACTACCATGGACTTGACTCGCCTTTCAGTTTAA 882 0.4354 MDPFFKHFNASVAIVIAIPLSAILLMSFYTIYTRCCTHSPSYNFDNTIINTRCSRRMTRGLDSSVIETFPILEYLVVKNHNNGKCILECAVCLDEFEDDETLRLIPKCDHVFHPECIDEWFESHTTCPVCRANLVPNPQGIESQNDVILTVPEQQERERNEQSNVILINQTLNRIRTKRSRSNRKSQFPRSYSTGHSLIQPGENTERFTLKLSFDVKEKIMQNPNPKFNRARSMVILHRELDQGFKSDRFIFTMTPPFLVRASSLKSPRVTNNVATLPQLPPSTTMDLTRLSV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0524 293 PANTHER RING FINGER DOMAIN-CONTAINING 2 138 - -
Lal24g0524 293 PANTHER RING FINGER DOMAIN-CONTAINING 140 252 - -
Lal24g0524 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 137 IPR013083 -
Lal24g0524 293 MobiDBLite consensus disorder prediction 178 200 - -
Lal24g0524 293 CDD RING-H2_EL5_like 88 131 - -
Lal24g0524 293 MobiDBLite consensus disorder prediction 186 200 - -
Lal24g0524 293 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Lal24g0524 293 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 140 252 - -
Lal24g0524 293 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 138 - -
Lal24g0524 293 SUPERFAMILY RING/U-box 88 138 - -
Lal24g0524 293 SMART ring_2 89 130 IPR001841 -
Lal24g0524 293 Pfam Ring finger domain 88 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0524 Lal-Chr24 3679273 3680154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0524 5 290 Rapid Response to Elicitors AT3G05200 38.170 8.50e-63 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0524 K10664 - gmx:100810865 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0735 12 5581458 5582534 Lal24g0524 24 3679273 3680154 LSH
Lal13g0852 13 5810788 5811711 Lal24g0524 24 3679273 3680154 LSH
Lal13g0662 13 4277895 4278827 Lal24g0524 24 3679273 3680154 LSH
Lal3g1477 3 20662686 20663768 Lal24g0524 24 3679273 3680154 PCT
Lal24g0524 24 3679273 3680154 Lal3g1477 3 20662686 20663768 PCT