Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0503 ATGGGTGGTTGGGGAGATGCTGATAAGAAAAAGAGAATGGCCATTATTAGTGTCTTTACAATCTTATTGGTGGCTATGGTTATGGTTAGCTCAATTGGTTTGAGTATCAAGCACAATGAGAATCATTCCAAAGATTATGATCATAATAACAAGACCCATGCAGTTTCTACAATGAAAGCAGTGAAAATCCTTTGTCAACCCACTGATTACAAGAAAGATTGTGAGGAAAGCCTCATAGCAGAAGCTAACACCACAGACACTAGAAAACTCATTCAGATTGCTTTCAATATAACCATTAAGAGAATTGGTAATAGTCTTAAGAAAACTAATCTCATGCATGACGTTGAGAAGGATCATAAAGCAAAGATGGCACTTGATACATGTAAGCAACTTATGGATCTTTCAATCAATGAGTTTAATAGGTCACTTGAGAGAATAAGAATATTTCATATTAATGATTTTGATAACATGCTCACAAGCTTGAAGGTTTGGCTAAGTGGTGCAATCACATACCAAGAAACTTGCTTGGATGGTTTTGAGAATATCAATAGTGAAGCTGGTGAGAAGATGAGAGATGTGTTAACAAAATCCATGCACATGAGTAGCAATGCTCTAGCTATAATCTATGGATTATCAAAAGCTCTTTCAGATTTGAATGCCTCAAATGTTACTGCACATGCCTTGCTTCAAGATTCTGAGGATCAACAAGTTTTCAATCATGATGAGTTGATTCCTTCTTGGGTTGATGGTGATAGTGCTGTTAGGAGACTCCTTCATACAAGCTCACATAAACTCAAGCCTCATGTGGTTGTAGCCAAAGATGGGAGTGGGAAGTTCAAGAGGATCAATGAGGCATTGAAAATGGTGCCTAAGAAGAATCAAAAGCCATTTATAATCTACATCAGAAAAGGTGTTTACCATGAATATGTTGAAGTTACTAAGCAAATGACTCATGTTGTGTTTGTTGGTGATGGTAGGAACAAGACACGAATTACTGGCAACAAAAACTTCATAGATGGGATTAACACTTACAGAACCTCCACTGTTGTTATCCAAGGAGATTACTTTGTTGGGATGAATATGGGGTTTGAAAACTCAGCTGGCCCTCACAAACATGAAGCAGTAGCCATAAGAGTGCAAGCAGACAAGTCCATATTTTACAAATGCTCATTTGATGGGTACCAAGACACTCTTTATGCTCACACCCATCGTCAATTCTACAGGGATTGCACCATTTCAGGCACCATTGACTTCATTTTTGGTGATGCAATAGCTGTTTTCCAAAACTGCACTTTCATACTCAGAAAGCCATTGAAAAACCAAAGTTGCATTGTGACCGCACAAGGTAGAAAAGAGAGGTATCAACCATCAGGAATAGTCATACAAGGAGGCTCCATTATATCCTCCCATGAGTACCACTCAGTGAGGTTCAAGAACAAAACCTACTTAGCTCGTCCATGGAAGAATTACTCGAGAACCATTTTCATGGACACTTACATTGATGATTTGGTTCAATGTGATGGTTATGTGCCAAGGCAAGGACCAAAGGGTACATTTTCTACTAAGGACACATGCTTCTATGCTGATTACAACAATATTGTCCTTGGTTCAAACAAATCAAAGCTTGTAAAATGCCATGGAATTAAGAAACTCACAAAACAAAAAGCAAGTAGTTTCTTACCTTCCAAGTTTTTTCATGAAGATGATTGGATTAAGGTTACTAGGATTCCTTACCAATCTGGCATGGGCTGTTTGGACATTGCATGGTTTCAGCAGAGACGCATTCCTTTGAAGGGCTTTGAGGGAGATTGCTATAACGCACTTCCATCAAACCCTTCTATTTTCCCTTCTCTTCGGTCCCTATAG 1866 0.3859 MGGWGDADKKKRMAIISVFTILLVAMVMVSSIGLSIKHNENHSKDYDHNNKTHAVSTMKAVKILCQPTDYKKDCEESLIAEANTTDTRKLIQIAFNITIKRIGNSLKKTNLMHDVEKDHKAKMALDTCKQLMDLSINEFNRSLERIRIFHINDFDNMLTSLKVWLSGAITYQETCLDGFENINSEAGEKMRDVLTKSMHMSSNALAIIYGLSKALSDLNASNVTAHALLQDSEDQQVFNHDELIPSWVDGDSAVRRLLHTSSHKLKPHVVVAKDGSGKFKRINEALKMVPKKNQKPFIIYIRKGVYHEYVEVTKQMTHVVFVGDGRNKTRITGNKNFIDGINTYRTSTVVIQGDYFVGMNMGFENSAGPHKHEAVAIRVQADKSIFYKCSFDGYQDTLYAHTHRQFYRDCTISGTIDFIFGDAIAVFQNCTFILRKPLKNQSCIVTAQGRKERYQPSGIVIQGGSIISSHEYHSVRFKNKTYLARPWKNYSRTIFMDTYIDDLVQCDGYVPRQGPKGTFSTKDTCFYADYNNIVLGSNKSKLVKCHGIKKLTKQKASSFLPSKFFHEDDWIKVTRIPYQSGMGCLDIAWFQQRRIPLKGFEGDCYNALPSNPSIFPSLRSL 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0503 621 Pfam Pectinesterase 268 566 IPR000070 GO:0030599|GO:0042545
Lal24g0503 621 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Lal24g0503 621 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 211 IPR006501 GO:0004857
Lal24g0503 621 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 213 IPR035513 -
Lal24g0503 621 PANTHER PECTINESTERASE 12 583 - -
Lal24g0503 621 SUPERFAMILY Pectin lyase-like 266 580 IPR011050 -
Lal24g0503 621 SMART PMEI_2 56 207 IPR006501 GO:0004857
Lal24g0503 621 PANTHER PECTINESTERASE 12 583 - -
Lal24g0503 621 Pfam Plant invertase/pectin methylesterase inhibitor 60 207 IPR006501 GO:0004857
Lal24g0503 621 CDD PMEI-like_3 64 213 - -
Lal24g0503 621 Gene3D - 262 582 IPR012334 -
Lal24g0503 621 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 209 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0503 Lal-Chr24 3550215 3554426 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0503 3 582 Carbohydrate Esterase AT3G05610 45.812 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0503 K01051 - gmx:100794799 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal3g1446 3 20394155 20398193 Lal24g0503 24 3550215 3554426 PCT
Lal18g0367 18 3126745 3129366 Lal24g0503 24 3550215 3554426 PCT