Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0502 ATGGCCACAAACTTGTTAAAGATATCAACTACCTTCTACACTCTTCTTTCCTTCTTCATCCTCTTCCTATCTCCCTCTCTTGAAGCTTTCTCCTTCTCCCCAAATACCACATGCAACCTAACACCTTATCCAACATTTTGCAAAACCACCATGCCCTCTCAATATTCATCTATACATGATCAATGCAATTTCTTCCTTATCCAATCATTATCAATAACCAAAACTATTATACAAGAGGTCTCTTCTTACCTTAGGGACCAATCCTATATACCTCTTTCCACTACACATGCACTTGAAGATTGTCTTTATCTTGCACAACTTAACATTGATTTTTTGTCCAATGTTCTTCAAGCCATAGAAAACACTGTCATTAGTTATCAAGCTTATAATTTTCAAACCATACTTGGTGCCATTTTAACAAATCAAAACACATGCTTAGATGGTTTTCATGAAGTAGCACCCTATCCTAGAATTACCACACCCTTGTCAAACCCTCTATCAGAAGGGATTAAACTTTATAGCATAGCATTGGCTCTATTCACACACGGTTATGTTAGTGATGATGCCACAGGAAAATTAACTTTTAATAATAATAATAAGTTACTGCAAAAAATAAGCATTGTTGATAATGTAATGGTTAGACAAAAGGTGGTGGTGAATTTAGATGGGTCAGGGAATTTTACTACAATAAATGATGCTGTGGATGCTGCACCTAACAATACCGGCACCAACAATGGGTACTATGTTATTTATGTTGTCACTGGGGTTTATAATGAGTACGTGTCTATTCCTAAGAGCAAACAGAACGTGATGATTATTGGTGATGGCATAAACTGCACTGTGATCACTGGCAATCGAAGCGTTGTTGATGGTTGGACCACTTTCCAATCTGCAACATTCGACTTCGATCGGGAAGCTTCCAATCACCGGGGAATTCCATTGTTACCGGGGTATGGGAAGAGTGGAGAGCCACAAGTGATGCACCACGTCTTGAACCAAAACCTTAAGGCATTAGTTTCATGGATCTTCTTTACTTATACACTTTTTCACTTATCCCCACATATTCAATCTGTAGTTGGAGAAGGCTTTGTTGCAGTAAACATAAGTTTTCGTAACACAGCAGGGTCAAACAAGCATCAAGCTGTTGCAGTAAGAAATGGTGCAGATATGTCCACATTTTACAATTGTAATTTTGAAGGATACCAAGACACACTATACACACATTCCTTTAGACAATTTTACAAAAACTGTAACATCTATGGCACAATTGATTTCATATTTGGAAATTCAGCAGCAGTATTCCAAGATTGTTACATATATCCTAGACTTCCAATGCGAAATCAATTCAATGCAATCACAGCACAAGGAAGAACAGATCCTAACCAAAACACTGGCATATCAATACAAAACTGTTACATTGTTGCATCCTATGAGTTAGGTGATGCAACTAACAATTATAATAAGATGAAGACATATTTGGGTAGACCTTGGAAAGAGTATTCAAGGACAGTTTATATGGAAACTTTTATAGATAAATTAATTGATCCTAAGGGTTGGATGGAATGGTCTGGGAATTTTGGTTTAAGCACATTGTATTATGCAGAGTTTAGTAACTGGGGGCCAGGTTCTAACACTAGTAAAAGGGTCACATGGGAAGGGTATCATCTTATAAATGGAAATGATGCACATAGTTTTACTGTGTATAAATTCATACGAGGTGACAGGTGGTTACCCAGGACAGGAGTGCCTTTCAAAGCTGGGTTACATTAA 1770 0.3734 MATNLLKISTTFYTLLSFFILFLSPSLEAFSFSPNTTCNLTPYPTFCKTTMPSQYSSIHDQCNFFLIQSLSITKTIIQEVSSYLRDQSYIPLSTTHALEDCLYLAQLNIDFLSNVLQAIENTVISYQAYNFQTILGAILTNQNTCLDGFHEVAPYPRITTPLSNPLSEGIKLYSIALALFTHGYVSDDATGKLTFNNNNKLLQKISIVDNVMVRQKVVVNLDGSGNFTTINDAVDAAPNNTGTNNGYYVIYVVTGVYNEYVSIPKSKQNVMIIGDGINCTVITGNRSVVDGWTTFQSATFDFDREASNHRGIPLLPGYGKSGEPQVMHHVLNQNLKALVSWIFFTYTLFHLSPHIQSVVGEGFVAVNISFRNTAGSNKHQAVAVRNGADMSTFYNCNFEGYQDTLYTHSFRQFYKNCNIYGTIDFIFGNSAAVFQDCYIYPRLPMRNQFNAITAQGRTDPNQNTGISIQNCYIVASYELGDATNNYNKMKTYLGRPWKEYSRTVYMETFIDKLIDPKGWMEWSGNFGLSTLYYAEFSNWGPGSNTSKRVTWEGYHLINGNDAHSFTVYKFIRGDRWLPRTGVPFKAGLH 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0502 589 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 182 IPR035513 -
Lal24g0502 589 Pfam Plant invertase/pectin methylesterase inhibitor 35 179 IPR006501 GO:0004857
Lal24g0502 589 SUPERFAMILY Pectin lyase-like 353 587 IPR011050 -
Lal24g0502 589 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 17-RELATED 20 300 - -
Lal24g0502 589 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 17-RELATED 357 587 - -
Lal24g0502 589 SUPERFAMILY Pectin lyase-like 215 323 IPR011050 -
Lal24g0502 589 SMART PMEI_2 29 179 IPR006501 GO:0004857
Lal24g0502 589 CDD PMEI-like_3 36 182 - -
Lal24g0502 589 ProSitePatterns Pectinesterase signature 2. 419 428 IPR033131 -
Lal24g0502 589 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 181 IPR006501 GO:0004857
Lal24g0502 589 Gene3D - 214 589 IPR012334 -
Lal24g0502 589 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 182 IPR035513 -
Lal24g0502 589 PANTHER PECTINESTERASE 357 587 - -
Lal24g0502 589 PANTHER PECTINESTERASE 20 300 - -
Lal24g0502 589 Pfam Pectinesterase 217 302 IPR000070 GO:0030599|GO:0042545
Lal24g0502 589 Pfam Pectinesterase 357 574 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0502 Lal-Chr24 3547002 3549436 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0502 15 588 Carbohydrate Esterase AT4G02330 43.134 5.57e-165 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0502 K01051 - gmx:100810329 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0160 5 1380858 1383946 Lal24g0502 24 3547002 3549436 PCT