Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0501 GTGCTTTTCTTCAAAATGTCTGGGGGAGGTGAAGAAAAGCGAAAAAGAATTGCTATTATTGGTTTCTCTACCCTTTTATTGGTGGCTATGATTGTTGTTGTAATAATGGGGATAAGTAATGAAACTGAGTTCAACGATGATAATGAAGATGATATAGAGGATAACCAAAAGCATGTTGCATCAACAATGAAAGCAGTGAAAACCCTTTGTTATCCCACAGATTACAAAAAAGAATGTGAGGAAAATCTCATGCCAGAAGCTGGTAACACCACAGATCCTAAAGAACTTGTTAAAATTGCCTTCAATGTAGCCATTTCCAAAATTGGTGATAAATTGAAGCAGACAGAGATTTTGCATGAGCTTGAGAATGAGCCAAGAGCCAAGTTGGCACTTGAAACATGCAAGCAACTCATGGATCTTTCAATTGATGAGTTTCTAAGGTCACTTGATCAAATAAGAGAGTTTGATCTCACAAATGTTGATAAAATTTTCACAAGTGTAAAGGTTTGGCTTAGTGGTGCAGTCACATACCAAGATACTTGCCTAGATGGATTTGAAAACACCACAAGCGAAGCGAGTAAGAAAATGAAGGACTTATTAACTTCAAGCATGCACATGAGTAGCAATGCTCTTGCAATTATCACCAACATGGCTGATACCATTGCAGATTGGAATGTCACAAGTTTACTAGGTGGTCGTCGCCTCCTTGAGGATTCTAAGAATGAAAATAGTTTCAATCTCCCAACTTGGGTTGATGATGCTCCTGGTGTACACAAACTTCTTGCAGAAGTTCCATTCAAAATCAAGCCTAATGTGACTGTAGCATTGGATGGCACTGGTGATTTCAAGAGCATCAATAAGGCATTGAAAAAGGTTCCTAGTGAGAATGAAAAGCCATTCGTGATCTACATCAAGAAAGGTATCTACCATGAGTATGTTCATGTTACCAAGGATATGACCAATGTGGTGTTTGTTGGTGATGGTGGTGATAAGACAAGAATCACTGGCAACAAAAACTTCATAGATGGGGTTAACACCTACAACACAACCACTGTTGCTATTCAAGGAGATCACTTTATTGCCATTAATGTGGGGTTTGAGAACTCAGCTGGACCCCACAAGCATCAAGCAGTGGCCATTAGGGTCCAAGCAGACAAGTCCATCTTCTACAAATGCCAATTTGATGGTTACCAAGACACTCTTTATGCCCACACCCACCGTCAGTTCTATAGAGATTGCATCGTTTCAGGTACCATTGACTTCATCTTTGGTGATGCTATTGCTGTATTCCAGAACTGCACATTTGTTGTGAGAAAGCCAATGAAAAACCAGAATTGCATTGTTACCGCACAAGGCAGAAAGGACAGACACCAACCTACAGGAATAGTCATTCAAGGAGGTTCCATTGTAGCTGACCCTATGCTCCAGGCTGCCAAGTTGGACCATAAATCCTACCTTGCACGTCCATGGAAGAATTTCTCAAGAACCATCTTCATGGATACATTCATTGATGGTTTCATTGACCCAGAAGGTTATTTGGCATGGCAAGGAGAAGAGGGTCCTATGCATATGAACACTTGTTTCTATTCTGAGTATCACAACTATGGTCCTGGTTCTGATAAATCAAAGCGTGCACATTGGGCTGGAATCTGGAACCTGAATTCAAAGGCAGCACATTTGTTCCAACCATCAAAATTCTTTCATGGAGATGATTGGATTGAGGATACTGGTATTCCTTATTACCCTGGCATTCCCAAACATTACAGGCACAAAAAAACAGTGCTCAATTGGTTACCTGAAAAAGAAGACAAAAAATAA 1818 0.4015 VLFFKMSGGGEEKRKRIAIIGFSTLLLVAMIVVVIMGISNETEFNDDNEDDIEDNQKHVASTMKAVKTLCYPTDYKKECEENLMPEAGNTTDPKELVKIAFNVAISKIGDKLKQTEILHELENEPRAKLALETCKQLMDLSIDEFLRSLDQIREFDLTNVDKIFTSVKVWLSGAVTYQDTCLDGFENTTSEASKKMKDLLTSSMHMSSNALAIITNMADTIADWNVTSLLGGRRLLEDSKNENSFNLPTWVDDAPGVHKLLAEVPFKIKPNVTVALDGTGDFKSINKALKKVPSENEKPFVIYIKKGIYHEYVHVTKDMTNVVFVGDGGDKTRITGNKNFIDGVNTYNTTTVAIQGDHFIAINVGFENSAGPHKHQAVAIRVQADKSIFYKCQFDGYQDTLYAHTHRQFYRDCIVSGTIDFIFGDAIAVFQNCTFVVRKPMKNQNCIVTAQGRKDRHQPTGIVIQGGSIVADPMLQAAKLDHKSYLARPWKNFSRTIFMDTFIDGFIDPEGYLAWQGEEGPMHMNTCFYSEYHNYGPGSDKSKRAHWAGIWNLNSKAAHLFQPSKFFHGDDWIEDTGIPYYPGIPKHYRHKKTVLNWLPEKEDKK 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0501 605 Pfam Plant invertase/pectin methylesterase inhibitor 65 213 IPR006501 GO:0004857
Lal24g0501 605 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 217 IPR035513 -
Lal24g0501 605 CDD PMEI-like_3 68 218 - -
Lal24g0501 605 Pfam Pectinesterase 271 570 IPR000070 GO:0030599|GO:0042545
Lal24g0501 605 ProSitePatterns Pectinesterase signature 2. 415 424 IPR033131 -
Lal24g0501 605 PANTHER PECTINESTERASE 16 585 - -
Lal24g0501 605 SUPERFAMILY Pectin lyase-like 269 583 IPR011050 -
Lal24g0501 605 TIGRFAM PME_inhib: pectinesterase inhibitor domain 61 217 IPR006501 GO:0004857
Lal24g0501 605 SMART PMEI_2 61 213 IPR006501 GO:0004857
Lal24g0501 605 Gene3D - 265 584 IPR012334 -
Lal24g0501 605 Gene3D Invertase/pectin methylesterase inhibitor family protein 60 218 IPR035513 -
Lal24g0501 605 PANTHER PECTINESTERASE 16 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0501 Lal-Chr24 3543547 3545495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0501 11 584 Carbohydrate Esterase AT3G05610 46.701 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0501 K01051 - gmx:100776244 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0501 24 3543547 3545495 Lal24g0501 24 3543547 3545495 ECH