Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0500 ATGACTAGAAAGAAGGTGAATCTTGCCTACATAGTCAATGATTCTGCAAGGAAGGCAACATACAAGAAAAGGAAGAAGGGTTTGTTGAAGAAGGTGGATGAACTCACCACCCTTTGTGGTATTGAAGCTTGTGCTATAATTTATAGCCCCTTTGAACCTCAACCAGAGGTTTGGCCATCTCCATGGGAAGTTCAAAATGTGCTTTCCAAGTTAAAAAGGATGCCTGAATTGGAGCAAAGCAAGAAGATGGTGAACCAAGAAACTTTCTTGAAACAAAGGATTGTGAAGGCTAAAGAGCAAGTGAAGAAACTGCAGAAAGAGAATAGGGAGAAGGAGATGACTCAGCTCATATTTAAGTGTCTTGGTGCTGATAAGGTACAGTTCAATAACTTGAGTGTAACTGATTTGAATGATCTTGCTTGGCTAATTGATCAGAACTTGAAGCATATTAAGAGAAGGATGGAAAAACTGGAAGAAAAAAATGATCAAATGAATCAAGGTCGATCCTATATGGTGGCACCATCACCATTATCACTGTCAGGTAGGGTACCCAAGAATGAAGAAATGGCATTGATGAATGGTAATGGAAATGAGGCAATGCAATTTGGAGAAACCAATCTCATAATGGGTTTTGACCTTAACCCATGA 648 0.3935 MTRKKVNLAYIVNDSARKATYKKRKKGLLKKVDELTTLCGIEACAIIYSPFEPQPEVWPSPWEVQNVLSKLKRMPELEQSKKMVNQETFLKQRIVKAKEQVKKLQKENREKEMTQLIFKCLGADKVQFNNLSVTDLNDLAWLIDQNLKHIKRRMEKLEEKNDQMNQGRSYMVAPSPLSLSGRVPKNEEMALMNGNGNEAMQFGETNLIMGFDLNP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0500 215 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 171 - -
Lal24g0500 215 Gene3D - 13 119 IPR036879 GO:0003677|GO:0046983
Lal24g0500 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal24g0500 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal24g0500 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal24g0500 215 PANTHER MADS BOX PROTEIN 2 171 - -
Lal24g0500 215 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lal24g0500 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lal24g0500 215 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lal24g0500 215 Coils Coil 140 167 - -
Lal24g0500 215 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lal24g0500 215 Coils Coil 87 114 - -
Lal24g0500 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0500 Lal-Chr24 3536899 3537546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0500 1 184 Type I MADS-box Gene Family AT5G48670 54.348 3.23e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal24g0500 SRF-TF 4.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0500 - - gmx:100813231 234.572