Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0484 ATGGAAGTGCTGCTTTTTCGACCCATGATTCTCAATCTTTTTTTGTTCCTTATCTCTTCTTCACTGGTTTGTATAGTTGCACAAGATTGTGGCCGCAACCAAGTTACAAAAACGATTGTTGTTGATAAATCTGGGAGAACAGGATTCATAACAGTTCAATCAGCAATCGATTCAATAGCCGAAAACAATAACCAATGGGTTAAAGTTCGCATAAATGCTGCCACTTACACTGAAAAGGTCGAAATTCCTTATAACAAGCCATGCATATATTTGGAAGGTGAAGACAGACATTCCACCATTATTACATACAATGACCATCAACAAACAGATATCAGCGCCACTTTCTCTTCCTTCCCAGACAATATTATTGCACGGAGTATTACTTTTAAGAACTCTTACAATGTTCCCCCATCACGCAATTTGCCACATGTGAAACGAAGAAACCAAGATAACGAAGTTCTCCCAGCACTTGCAGCAAGAATATATGGAGACAAATGTGTCTTTTTTGATTGTAGTTTCATTGGTTTTCAAGATACATTGTGGGATGTAGAAGGTCGTCATTACTTCAAAGATTGCACTATAGAAGGAGCTATAGACTTCATCTTTGGTTATGGTCAATCCTATTACGAGAACTGCATTCTCAATGCGAGTTCCTCAGGTTTTGTAACTGCTCAAGGACGCAGTGGGAAGAATGATAAAAGTGGGTTTGTATTCAGAGGTGGTGCTTTGATTGGTAATGGACAAACATTCTTAGGAAGAGCATATGGACCATTTTCTAGAGTCGTATTTTATGGAACATATTTCAGTTCAGTAGTTGCACCTGCAGGATGGAGTGCTTGGGAATCAAATCTCGGTTCTGGGACGACGTACATTGAAGCTGATTGTAAAGGGCCAGGTGCTAATACTTCAGGGCGCGTACCATGGTCCAAGAAGCTCCGTGGCTCAAAAATGGCTAAATATTCGAGATCATCCTTCATAGACCGAGATCGGTGGCTTTCATACTTACCCGTCTGT 1014 0.4043 MEVLLFRPMILNLFLFLISSSLVCIVAQDCGRNQVTKTIVVDKSGRTGFITVQSAIDSIAENNNQWVKVRINAATYTEKVEIPYNKPCIYLEGEDRHSTIITYNDHQQTDISATFSSFPDNIIARSITFKNSYNVPPSRNLPHVKRRNQDNEVLPALAARIYGDKCVFFDCSFIGFQDTLWDVEGRHYFKDCTIEGAIDFIFGYGQSYYENCILNASSSGFVTAQGRSGKNDKSGFVFRGGALIGNGQTFLGRAYGPFSRVVFYGTYFSSVVAPAGWSAWESNLGSGTTYIEADCKGPGANTSGRVPWSKKLRGSKMAKYSRSSFIDRDRWLSYLPVC 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0484 338 ProSitePatterns Pectinesterase signature 2. 194 203 IPR033131 -
Lal24g0484 338 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 337 - -
Lal24g0484 338 SUPERFAMILY Pectin lyase-like 35 336 IPR011050 -
Lal24g0484 338 Pfam Pectinesterase 39 327 IPR000070 GO:0030599|GO:0042545
Lal24g0484 338 Gene3D - 32 337 IPR012334 -
Lal24g0484 338 PANTHER PECTINESTERASE 6 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0484 Lal-Chr24 3404252 3405994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0484 29 283 Carbohydrate Esterase AT2G19150 45.627 1.09e-73 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0484 - - lang:109353850 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0484 24 3404252 3405994 Lal24g0484 24 3404252 3405994 ECH
Lal13g0609 13 3960776 3962740 Lal24g0484 24 3404252 3405994 LSH