Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0466 ATGACAAGGAAAAAGGTGAAGCTTGCTTATATCATAGATGACAATGCAAGGAAAGCAACATTCAAGAAAAGGAAGAAGGGTATTGTGAAGAAGGTAAGTGAACTCACCATTCTTTGTGGGATTGATGCATGTGCCATAATTTCCAACCCTTACGATTCTCAAGCAGAGGTTTGGCCTAACCCGAAAGGAGCAAAACATATAATTAAGAGGTACTTGAAGACTCCGGTGATAGATGAAACCAAGAACATGAATCAAGAGAGATTCATAATGCAAAAAATCTCTAAAGCTATGGAAAAGCTTGATAAGCAACGCAATGAAAATCGTGAGAAGCAAATTACCCTAGCCATGTTTGAATGTATGGCAAAAAGAAAGAACTTGGAAAAATTTACCATTGGGGATCTAAAAGATATGGACAAGTTTATTGAGAATTATATGAAGGATATCAAAAGTAAGATTGATGAACTTGCTTGA 471 0.3609 MTRKKVKLAYIIDDNARKATFKKRKKGIVKKVSELTILCGIDACAIISNPYDSQAEVWPNPKGAKHIIKRYLKTPVIDETKNMNQERFIMQKISKAMEKLDKQRNENREKQITLAMFECMAKRKNLEKFTIGDLKDMDKFIENYMKDIKSKIDELA 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0466 156 Coils Coil 90 113 - -
Lal24g0466 156 Gene3D - 13 122 IPR036879 GO:0003677|GO:0046983
Lal24g0466 156 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Lal24g0466 156 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 154 - -
Lal24g0466 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal24g0466 156 PANTHER MADS BOX PROTEIN 2 154 - -
Lal24g0466 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lal24g0466 156 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Lal24g0466 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal24g0466 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0466 Lal-Chr24 3288192 3288662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0466 1 155 Type I MADS-box Gene Family AT5G48670 49.359 5.47e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal24g0466 SRF-TF 2.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0466 - - gmx:100792290 177.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0589 13 3848045 3848509 Lal24g0466 24 3288192 3288662 LSH