Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0456 ATGGCTTCAATTATAGGCGTTTCTTCCATTTACCAAACCCCTTCTCTTCAACTCCTTAAACGACAACAAACAAACCCTTCCGTTTCATTGAAACCGTTGTCGTTTAACAACAACAACAACAACTCTCATTTCAACACTCTTCTCAGAGCTCATCTTTATAAGCGCAAGATTTCTGCTATTGCTACGAACAATTCTTCCCTACTCACTGAAGAAGCACTTGATGGATTAGGTTTTGATGATGTCACTGATGATAACGATGATTTTGATAGTTTTGATTATGAGAATGAAAATGAAATCCCTTCTGCTCCTATTAGTACTGATGAACTTGATGTTTCTAAGCTGGATTTGCCTTCGCGACTCATAGACTCGCTTAAGAAGCGTGGAATCACTCACCTTTTCCCTATTCAGAGAGCTGTTCTAGTACCTGCACTAGAAGGTAGAGATATCATTGCTCGGGCAAAGACTGGAACTGGCAAGACATTAGCATTTGGAATTCCAATTCTTAAAGGCCTCACTGATGATGACCGGAATCCTATTAGGCGTGGTCGTCTTCCTAAAGCATTGGTCCTTGCACCTACTAGGGAGTTAGCAAAGCAAGTAGAGAAAGAGATCAATGAATCTGCACCTTATCTGAGCACGGTTTGTGTTTATGGTGGTGTTTCCTATGTAACTCAACAAAGTGCACTTTCACGTGGTGTTGATGTAGTGGTTGGAACACCTGGTAGAATAATTGACCTTATAAATGGGAACAGCCTTAAACTGAATGAAATTCAGTATTTGGTTCTTGATGAAGCTGACCGGATGCTTGCTGTTGGGTTCGAGGAGGATGTGGAAACAATTTTACAGACTGTCCCATCTGAGCGGCAGACCATGCTTTTTTCTGCAACCATGCCGGGTTGGGTGCAGAAATTGTCAAGAAAGTATTTGAACAAACCATTGACAATTGATTTGGTCGGCAACGAAGAAGAAAAGCTAGCTGAAGGGATCAAGCTTTATGCTATGTCTGCCACCTCTACTTCAAAGAGAACAGTCCTTTCTGATCTTGTAACTGTTTATGCAAAAGGTGGCAAGACTATTGTATTTACGCAGACAAAAAAAGATGCTGATGAAGTATCATTGTCCTTAACAAATATCATATCTTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTAAATGGTTTTCGGCAAGGGAAATTTACAGTACTTGTTGCCACTGATGTTGCATCTCGTGGACTTGATATTCCCAATGTTGATTTGGTTATCCACTATGAACTTCCAAATGACCCTGAGACTTTTGTACACCGCTCTGGGCGTACTGGGCGTGCAGGAAAACAAGGTACTGCTATTCTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTCGAGCGTGATGTAGGCTGCAAATTTGAATTTATTAGTCCACCAGCAATTGGAGAGATTTTGGAGTCATCTGCCGATCAAGTTGTTGCTACACTTAAACTTGTTCATCCCGAGTCTATTGAGTTCTTCACCCCAACTGCACAAAAACTGTTTGAAGAACAAGGCACAAGTGCCCTTGCAGCTGCACTAGCACAGCTGAGTGGATTCTCTCGACCTCCATCATCCCGGTCTCTTATCAACCATGAACAGGGATGGGTTACGCTACAACTGACTCGAGATGGCGATAACTCTAGAAGATTTCTTTCTGCAAGATCAGTAACTGGGTTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACACTTAATTGCAGATGAAAGGGTTCAAGGAGCTGTTTTTGATCTTCCGGAGGAGATTGCTAAAGAGTTACTCACCAAGGTGATTCCACCAGGAAACACTATTTCAAAGATCACCAAGTTACCTCCTTTGCAAGATGATGGACCTGCAAGTGATTTCTATGGGAGGTTTTCCGATGACAGAGAACAAAGAAGTTCTAGAAATTCAAGAGGAGGTTTTAAGAGCTCACAGTCATGGGGAGGTGGCCGAAACTCCGATGATGACTTCGGTAATTCGTACGGTAGAGGCGGTGGTAGAGGTTATAGGTCTGCCAACAACAACAACAGGTCTCAAACGAGGAGAAGCAGTGGAGATGACTGGCTGATTGGAGGTAGAGGATCAAGCAGGTCTTCATCATCAAACAGAAGTAGCTATGGAGGAGGGGCCTGTTTTAATTGTGGACAAACTGGGCATAAGGCATCAGAATGTAAGAATAGAGACTTTTTTTAG 2262 0.4248 MASIIGVSSIYQTPSLQLLKRQQTNPSVSLKPLSFNNNNNNSHFNTLLRAHLYKRKISAIATNNSSLLTEEALDGLGFDDVTDDNDDFDSFDYENENEIPSAPISTDELDVSKLDLPSRLIDSLKKRGITHLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPILKGLTDDDRNPIRRGRLPKALVLAPTRELAKQVEKEINESAPYLSTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLNEIQYLVLDEADRMLAVGFEEDVETILQTVPSERQTMLFSATMPGWVQKLSRKYLNKPLTIDLVGNEEEKLAEGIKLYAMSATSTSKRTVLSDLVTVYAKGGKTIVFTQTKKDADEVSLSLTNIISSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKQGTAILMYTSSQRRTVRSLERDVGCKFEFISPPAIGEILESSADQVVATLKLVHPESIEFFTPTAQKLFEEQGTSALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDGDNSRRFLSARSVTGFLSDVYSPAADEVGKIHLIADERVQGAVFDLPEEIAKELLTKVIPPGNTISKITKLPPLQDDGPASDFYGRFSDDREQRSSRNSRGGFKSSQSWGGGRNSDDDFGNSYGRGGGRGYRSANNNNRSQTRRSSGDDWLIGGRGSSRSSSSNRSSYGGGACFNCGQTGHKASECKNRDFF 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0456 753 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 261 269 IPR000629 -
Lal24g0456 753 Gene3D - 330 523 IPR027417 -
Lal24g0456 753 Pfam GUCT (NUC152) domain 536 636 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lal24g0456 753 CDD SF2_C_DEAD 329 458 - -
Lal24g0456 753 SMART c2hcfinal6 733 749 IPR001878 GO:0003676|GO:0008270
Lal24g0456 753 Gene3D - 723 751 - -
Lal24g0456 753 Pfam Helicase conserved C-terminal domain 344 449 IPR001650 -
Lal24g0456 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 470 IPR027417 -
Lal24g0456 753 SMART ultradead3 128 332 IPR014001 -
Lal24g0456 753 Gene3D - 110 319 IPR027417 -
Lal24g0456 753 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 21 744 - -
Lal24g0456 753 SUPERFAMILY Retrovirus zinc finger-like domains 713 750 IPR036875 GO:0003676|GO:0008270
Lal24g0456 753 CDD DEADc 120 316 - -
Lal24g0456 753 ProSiteProfiles Zinc finger CCHC-type profile. 734 749 IPR001878 GO:0003676|GO:0008270
Lal24g0456 753 CDD GUCT_Hera 543 623 - -
Lal24g0456 753 MobiDBLite consensus disorder prediction 692 708 - -
Lal24g0456 753 MobiDBLite consensus disorder prediction 660 676 - -
Lal24g0456 753 MobiDBLite consensus disorder prediction 626 729 - -
Lal24g0456 753 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 504 IPR001650 -
Lal24g0456 753 PANTHER - 21 744 - -
Lal24g0456 753 Pfam DEAD/DEAH box helicase 133 304 IPR011545 GO:0003676|GO:0005524
Lal24g0456 753 Pfam Zinc knuckle 733 749 IPR001878 GO:0003676|GO:0008270
Lal24g0456 753 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 315 IPR014001 -
Lal24g0456 753 SMART helicmild6 369 449 IPR001650 -
Lal24g0456 753 MobiDBLite consensus disorder prediction 644 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0456 Lal-Chr24 3215035 3220683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0456 93 471 Eukaryotic Initiation Factors Gene Family AT1G72730 37.240 6.43e-67 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0456 - - vra:106757668 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0456 24 3215035 3220683 Lal3g1418 3 20081257 20085658 ECH
Lal24g0456 24 3215035 3220683 Lal24g0456 24 3215035 3220683 ECH
Lal13g0573 13 3740689 3745866 Lal24g0456 24 3215035 3220683 LSH
Lal3g1418 3 20081257 20085658 Lal24g0456 24 3215035 3220683 PCT
Lal24g0456 24 3215035 3220683 Lal3g1418 3 20081257 20085658 PCT